scaffold726-EXSNAP2012.5 (Pristionchus exspectatus)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 scaffold726-EXSNAP2012.5 T310313_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
nhr-1
M00686_2.00 		Caenorhabditis elegans
ARTGATCA
TGATCAYT		 PBM
Narasimhan et al.(2015)
pTH9322 		0.842 0.586
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold726-EXSNAP2012.5 Nuclear receptor 161 230

Links

Other Nuclear receptor family TFs
Other Pristionchus exspectatus TFs

164 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29212.m000177 Ricinus communis 29212.m000177 N
AMTR_s00009p00257950 Amborella trichopoda AMTR_s00009p00257950 N
AMTR_s00133p00075670 Amborella trichopoda AMTR_s00133p00075670 N
MYB3 Arabidopsis thaliana AT1G22640 D
MYB95 Arabidopsis thaliana AT1G74430 N
AtMYB41 Arabidopsis thaliana AT4G28110 D
BRADI4G04050 Brachypodium distachyon BRADI4G04050 I
Ciclev10023519m.g Citrus clementina Ciclev10023519m.g N
evm.TU.supercontig_34.3 Carica papaya evm.TU.supercontig_34.3 N
e_gw1.1.4.1 Physcomitrella patens e_gw1.1.4.1 N
gene24516-v1.0-hybrid Fragaria vesca gene24516-v1.0-hybrid N
GLYMA0041S00310 Glycine max GLYMA0041S00310 I
GLYMA05G03780 Glycine max GLYMA05G03780 I
GRMZM2G001223 Zea mays GRMZM2G001223 I
GRMZM2G051528 Zea mays GRMZM2G051528 I
MDP0000119369 Malus domestica MDP0000119369 N
MDP0000911051 Malus domestica MDP0000911051 N
mg021480m Mimulus guttatus mg021480m N
mgf021965m Mimulus guttatus mgf021965m N
mgf025944m Mimulus guttatus mgf025944m N
MLOC_12474 Hordeum vulgare MLOC_12474 N
MLOC_13019 Hordeum vulgare MLOC_13019 I
MLOC_59184 Hordeum vulgare MLOC_59184 N
MLOC_59663 Hordeum vulgare MLOC_59663 I
MLOC_71332 Hordeum vulgare MLOC_71332 N
MTR_4g063100 Medicago truncatula MTR_4g063100 I
OLONG_005719 Oryza longistaminata OLONG_005719 N
OS01G0685400 Oryza sativa OS01G0685400 N
OS04G0517100 Oryza sativa OS04G0517100 N
OS07G0634900 Oryza sativa OS07G0634900 N
OS08G0548000 Oryza sativa OS08G0548000 N
OS12G0515300 Oryza sativa OS12G0515300 N
Pavir.Eb03517 Panicum virgatum Pavir.Eb03517 I
Pavir.J11191 Panicum virgatum Pavir.J11191 N
PGSC0003DMG400004610 Solanum tuberosum PGSC0003DMG400004610 N
PGSC0003DMG400013215 Solanum tuberosum PGSC0003DMG400013215 I
PK00358.1 Cannabis sativa PK00358.1 N
SapurV1A.0006s0790 Salix purpurea SapurV1A.0006s0790 I
Traes_1BL_A44464337 Triticum aestivum Traes_1BL_A44464337 N
Traes_2DL_0E9BE0271 Triticum aestivum Traes_2DL_0E9BE0271 N
Traes_3AL_F09C7CA19 Triticum aestivum Traes_3AL_F09C7CA19 N
Traes_3DL_D9A29948B Triticum aestivum Traes_3DL_D9A29948B N
Traes_4BL_61E35C455 Triticum aestivum Traes_4BL_61E35C455 N
Traes_5AS_D238844BB Triticum aestivum Traes_5AS_D238844BB N