CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

pax1a *(Tetraodon nigroviridis)* Paired box
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00292 (PAX)	IPR001523	ENSTNIG00000016891	T311838_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
PAX1 M03442_2.00	Homo sapiens	DBCANTSAWGCGTGACS	SGTCACGCWTSANTGVH	SELEX Jolma et al.(2013) PAX1_1	0.976	0.976
PAX1 M05687_2.00	Homo sapiens	BCRNTSRWGCGTGACSN	NSGTCACGCWYSANYGV	SELEX Yin et al.(2017) PAX1_eDBD_HT-SELEX	0.976	0.976
PAX1 M11207_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PAX1_B	0.976	0.976
PAX1 M05688_2.00	Homo sapiens	BCRNTSAWGCGTGACSN	NSGTCACGCWTSANYGV	SELEX Yin et al.(2017) PAX1_eDBD_Methyl-HT-SELEX	0.976	0.976
PAX9 M03444_2.00	Homo sapiens	NKCANTSAWGCGTGACS	SGTCACGCWTSANTGMN	SELEX Jolma et al.(2013) PAX9_1	0.952	0.952
PAX9 M05689_2.00	Homo sapiens	BHRNYSRDSCGTRACSN	NSGTYACGSHYSRNYDV	SELEX Yin et al.(2017) PAX9_eDBD_HT-SELEX	0.952	0.952
PAX9 M05690_2.00	Homo sapiens	BCRNTSAWSCGYGACNN	NNGTCRCGSWTSANYGV	SELEX Yin et al.(2017) PAX9_eDBD_Methyl-HT-SELEX	0.952	0.952
pax9 M11204_2.00	Danio rerio	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PAX9_B	0.944	0.944
Poxm M03944_2.00	Drosophila melanogaster	CAVTCAWGCGTGACR	YGTCACGCWTGABTG	SELEX Nitta et al.(2015) Poxm_1	0.888	0.888
Poxm M03945_2.00	Drosophila melanogaster	NYSAWGCRTRACS	SGTYAYGCWTSRN	SELEX Nitta et al.(2015) Poxm_2	0.888	0.888
Poxm M06436_2.00	Drosophila melanogaster	NNNNNNMVNHNRNSCRTGA	TCAYGSNYNDNBKNNNNNN	B1H Zhu et al.(2011) Poxm_SOLEXA_5_FBgn0003129	0.888	0.888
PAX7 M00346_2.00	Homo sapiens	NGTYAYGSHN	NDSCRTRACN	PBM Barrera et al.(2016) PAX7_REF	0.760	0.760
PAX7 M00345_2.00	Homo sapiens	NSGTCACGSN	NSCGTGACSN	PBM Barrera et al.(2016) PAX7_P112L	0.752	0.752
Pax5B M01301_2.00	Gallus gallus	NSNDTNNNN	NNNNAHNSN	PBM Lambert et al.(2019) pTH9781	0.744	0.744
pax2 M02428_2.00	Xenopus tropicalis	NNNRNBCRNN	NNYGVNYNNN	PBM Weirauch et al.(2014) pTH8556	0.744	0.744
PAX5 M03443_2.00	Homo sapiens	RNBYANYSAWSCGTRACN	NGTYACGSWTSRNTRVNY	SELEX Jolma et al.(2013) PAX5_1	0.744	0.744
PAX5 M08160_2.00	Homo sapiens	RDGCGTGACCNN	NNGGTCACGCHY	ChIP-seq Mathelier et al.(2014) MA0014.3	0.744	0.744
PAX5 M07995_2.00	Homo sapiens	BCAVYSRDSCRKRRC	GYYMYGSHYSRBTGV	ChIP-seq Gerstein et al.(2012) GM12878_PAX5C20_HudsonAlpha	0.744	0.744
PAX5 M07996_2.00	Homo sapiens	BCASYSRDSCRTRAC	GTYAYGSHYSRSTGV	ChIP-seq Gerstein et al.(2012) GM12878_PAX5N19_HudsonAlpha	0.744	0.744
PAX5 M07997_2.00	Homo sapiens	CASYSRDSCRKRACN	NGTYMYGSHYSRSTG	ChIP-seq Gerstein et al.(2012) GM12891_PAX5C20_HudsonAlpha	0.744	0.744
PAX5 M07998_2.00	Homo sapiens	BCASYSRDSCGKRRC	GYYMCGSHYSRSTGV	ChIP-seq Gerstein et al.(2012) GM12892_PAX5C20_HudsonAlpha	0.744	0.744
PAX5 M08227_2.00	Homo sapiens	BCANYSRDGCGTRAM	KTYACGCHYSRNTGV	ChIP-seq Contrino et al.(2012) Mv108	0.744	0.744
PAX5 M08228_2.00	Homo sapiens	AGCGTGRCYG	CRGYCACGCT	ChIP-seq Contrino et al.(2012) Mv109	0.744	0.744
PAX5 M09341_2.00	Homo sapiens	SNVDGNKCARCVRAGCRDGAC	GTCHYGCTYBGYTGMNCHBNS	Misc Kulakovskiy et al.(2013) PAX5_HUMAN.H11MO.0.A	0.744	0.744
Pax5 M09342_2.00	Mus musculus	VDRNBCAVYVRDSCRKRRM	KYYMYGSHYBRBTGVNYHB	Misc Kulakovskiy et al.(2013) PAX5_MOUSE.H11MO.0.A	0.744	0.744
PAX5 M09622_2.00	Homo sapiens	BCASYSRDSCRTGRMN	NKYCAYGSHYSRSTGV	Misc Heinz et al.(2010) GM12878-PAX5_GSE32465_1	0.744	0.744
PAX5 M09623_2.00	Homo sapiens	BCABNVRSCGTGAC	GTCACGSYBNVTGV	Misc Heinz et al.(2010) GM12878-PAX5_GSE32465_2	0.744	0.744
PAX5 M11208_2.00	Homo sapiens	BCNNNRNKCANBGNWGNRKRGMSRSHNB	VNDSYSKCYMYNCWNCVNTGMNYNNNGV	Transfac Matys et al.(2006) V$PAX5_01	0.744	0.744
PAX5 M11209_2.00	Homo sapiens	VRHVDGDNDBBTNRAGCGKRACVRYNVH	DBNRYBGTYMCGCTYNAVVHNHCHBDYB	Transfac Matys et al.(2006) V$PAX5_02	0.744	0.744
PAX5 M11210_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PAX5_06	0.744	0.744
PAX5 M11211_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PAX5_07	0.744	0.744
PAX5 M11212_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PAX5_Q6	0.744	0.744
pax2b M02425_2.00	Danio rerio	HVNYSRNSCR	YGSNYSRNBD	PBM Weirauch et al.(2014) pTH8679	0.736	0.736
PAX8 M05685_2.00	Homo sapiens	NRNBYRNYSRWGCGTGACSN	NSGTCACGCWYSRNYRVNYN	SELEX Yin et al.(2017) PAX8_FL_HT-SELEX	0.720	0.720
Pax8 M09624_2.00	Rattus norvegicus	BCAGBCADSCRKGVM	KBCMYGSHTGVCTGV	Misc Heinz et al.(2010) Thyroid-Pax8_GSE26938	0.720	0.720
PAX8 M11205_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PAX8_01	0.720	0.720
PAX8 M11206_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PAX8_B	0.720	0.720
PAX8 M05686_2.00	Homo sapiens	NRNBCRNTSAWSCGYGACNN	NNGTCRCGSWTSANYGVNYN	SELEX Yin et al.(2017) PAX8_FL_Methyl-HT-SELEX	0.720	0.720
sv M01302_2.00	Drosophila melanogaster	NNNSCRBRDM	KHYVYGSNNN	PBM Lambert et al.(2019) pTH9773	0.712	0.712
sv M03949_2.00	Drosophila melanogaster	NBCRNYSAWGCGTGACS	SGTCACGCWTSRNYGVN	SELEX Nitta et al.(2015) sv_1	0.712	0.712
sv M06438_2.00	Drosophila melanogaster	RNYSRDSCGTRACNN	NNGTYACGSHYSRNY	B1H Zhu et al.(2011) sv_SOLEXA_5_FBgn0005561	0.712	0.712
For this family, TFs with SR scores > 0.700* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSTNIP00000020009	Paired box	4	128	TYGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPRVTTPNVVKNIREYKQNDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILR

Links
Other Paired box family TFs
Other *Tetraodon nigroviridis* TFs

525 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
36550	Aureococcus anophagefferens	36550	N	0.000
68433	Aureococcus anophagefferens	68433	N	0.000
ANCCAN_05715	Ancylostoma caninum	ANCCAN_05715	N	0.000
ANCDUO_13942	Ancylostoma duodenale	ANCDUO_13942	N	0.000
ASIM_0000075001	Anisakis simplex	ASIM_0000075001	N	0.000
BN7_5034	Wickerhamomyces ciferrii	BN7_5034	N	0.000
CaO19.1731	Candida albicans	CaO19.1731	N	0.000
CaO19.9299	Candida albicans	CaO19.9299	N	0.000
CC1G_07924	Coprinopsis cinerea	CC1G_07924	N	0.000
CMQ_5875	Grosmannia clavigera	CMQ_5875	N	0.000
DAPPUDRAFT_259784	Daphnia pulex	DAPPUDRAFT_259784	N	0.000
DICVIV_04576	Dictyocaulus viviparus	DICVIV_04576	N	0.000
DILT_0001419401	Diphyllobothrium latum	DILT_0001419401	N	0.000
EMIHUDRAFT_107556	Emiliania huxleyi	EMIHUDRAFT_107556	N	0.000
EMIHUDRAFT_251194	Emiliania huxleyi	EMIHUDRAFT_251194	N	0.000
HMG20A	Pteropus vampyrus	ENSPVAG00000003321	N	0.000
estExt_Genewise1.C_sca_3_chr4_2_00418	Nectria haematococca	estExt_Genewise1.C_sca_3_chr4_2_00418	N	0.000
GF20527	Drosophila ananassae	FBgn0097533	N	0.000
GA28914	Drosophila pseudoobscura	FBgn0250273	N	0.000
fgenesh1_pg.sca_3_chr4_2_0000426	Nectria haematococca	fgenesh1_pg.sca_3_chr4_2_0000426	N	0.000
GLOINDRAFT_193164	Rhizophagus irregularis	GLOINDRAFT_193164	N	0.000
GPLIN_000530400	Globodera pallida	GPLIN_000530400	N	0.000
HelroG167700	Helobdella robusta	HelroG167700	N	0.000
HmN_000301900	Hymenolepis microstoma	HmN_000301900	N	0.000
M7I_1506	Glarea lozoyensis	M7I_1506	N	0.000
MTR_6g048860	Medicago truncatula	MTR_6g048860	N	0.000
Myotis_brandtii_TFAM_10031378	Myotis brandtii	Myotis_brandtii_TFAM_10031378	N	0.000
NechaG59892	Fusarium solani	NechaG59892	N	0.000
NechaG79025	Fusarium solani	NechaG79025	N	0.000
OESDEN_13669	Oesophagostomum dentatum	OESDEN_13669	N	0.000
OESDEN_19415	Oesophagostomum dentatum	OESDEN_19415	N	0.000
OESDEN_23252	Oesophagostomum dentatum	OESDEN_23252	N	0.000
PFICI_01816	Pestalotiopsis fici	PFICI_01816	N	0.000
PITG_13138	Phytophthora infestans	PITG_13138	N	0.000
PITG_13146	Phytophthora infestans	PITG_13146	N	0.000
PV06_10806	Exophiala oligosperma	PV06_10806	N	0.000
SCHCODRAFT_111189	Schizophyllum commune	SCHCODRAFT_111189	N	0.000
SPU_021871	Strongylocentrotus purpuratus	SPU_021871	N	0.000
Thaps10018	Thalassiosira pseudonana	Thaps10018	N	0.000
Thhalv10015680m.g	Eutrema salsugineum	Thhalv10015680m.g	N	0.000

pax1a (Tetraodon nigroviridis) Paired box

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

525 Related TFs

pax1a **(Tetraodon nigroviridis)
Paired box**