rib (Drosophila melanogaster)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF05225 (HTH_psq) IPR007889 FBgn0003254 T313652_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
rib
M03950_2.00		 Drosophila melanogaster
YNKTGCRAWT
AWTYGCAMNR		 SELEX
Nitta et al.(2015)
rib_1		 (Direct) (Direct)
rib
M06439_2.00		 Drosophila melanogaster
YGCRAAAWW
WWTTTYGCR		 B1H
Zhu et al.(2011)
rib_SANGER_5_FBgn0003254		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.778 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0085700 Pipsqueak 373 417
FBpp0303090 Pipsqueak 373 417
FBpp0303091 Pipsqueak 373 417

Links

Other Pipsqueak family TFs
Other Drosophila melanogaster TFs

13 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AC200124.3_FG005 Zea mays AC200124.3_FG005 N
AC234164.1_FG004 Zea mays AC234164.1_FG004 N
BGIOSGA022020 Oryza indica BGIOSGA022020 N
BRADI1G49630 Brachypodium distachyon BRADI1G49630 N
LPERR06G01410 Leersia perrieri LPERR06G01410 N
OBART06G01600 Oryza barthii OBART06G01600 N
OGLUM06G01600 Oryza glumaepatula OGLUM06G01600 N
ONIVA06G01910 Oryza nivara ONIVA06G01910 N
OPUNC06G01470 Oryza punctata OPUNC06G01470 N
ORGLA06G0016600 Oryza glaberrima ORGLA06G0016600 N
ORUFI06G01590 Oryza rufipogon ORUFI06G01590 N
DLT Oryza sativa OS06G0127800 N
Pavir.Da02353 Panicum virgatum Pavir.Da02353 N
Pavir.J20271 Panicum virgatum Pavir.J20271 N
Sb10g001690 Sorghum bicolor Sb10g001690 N
Traes_4AL_7B4A599EC Triticum aestivum Traes_4AL_7B4A599EC N
Traes_4AL_FB3CE240C Triticum aestivum Traes_4AL_FB3CE240C N
Traes_4BS_EC11C40EC Triticum aestivum Traes_4BS_EC11C40EC N