ENSONIG00000005780 (Oreochromis niloticus)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSONIG00000005780 T318409_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.761 0.873
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.761 0.873
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.761 0.873
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.761 0.873
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.694 0.570
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.694 0.570
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.694 0.570
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.694 0.570
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.694 0.570
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.694 0.570
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.694 0.570
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.694 0.570
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.694 0.570
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.694 0.570
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.694 0.570
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.694 0.570
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.694 0.570
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.694 0.570
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.694 0.570
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSONIP00000007282 RFX 96 175

Links

Other RFX family TFs
Other Oreochromis niloticus TFs

248 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30180.m001071 Ricinus communis 30180.m001071 N
AMTR_s00007p00170710 Amborella trichopoda AMTR_s00007p00170710 I
Aquca_004_00748 Aquilegia coerulea Aquca_004_00748 I
Aquca_081_00012 Aquilegia coerulea Aquca_081_00012 I
BHLH106 Arabidopsis thaliana AT2G41130 N
Bo3g035410 Brassica oleracea Bo3g035410 N
Bo4g012960 Brassica oleracea Bo4g012960 N
Bo4g112750 Brassica oleracea Bo4g112750 N
Bo4g190700 Brassica oleracea Bo4g190700 N
Bostr.20505s0075 Boechera stricta Bostr.20505s0075 N
Bostr.9345s0019 Boechera stricta Bostr.9345s0019 N
Bra004599 Brassica rapa Bra004599 N
Bra014672 Brassica rapa Bra014672 N
Bra016951 Brassica rapa Bra016951 N
BRADI1G04280 Brachypodium distachyon BRADI1G04280 N
BRADI2G07050 Brachypodium distachyon BRADI2G07050 N
Cagra.0578s0007 Capsella grandiflora Cagra.0578s0007 N
Cagra.1642s0077 Capsella grandiflora Cagra.1642s0077 N
Carubv10017947m.g Capsella rubella Carubv10017947m.g N
Carubv10023903m.g Capsella rubella Carubv10023903m.g N
cassava7163.valid.m1 Manihot esculenta cassava7163.valid.m1 N
Ca_07159 Cicer arietinum Ca_07159 N
chr1.CM0816.330.nc Lotus japonicus chr1.CM0816.330.nc N
Cla017413 Citrullus lanatus Cla017413 N
Cla019977 Citrullus lanatus Cla019977 I
Cucsa.213230 Cucumis sativus Cucsa.213230 I
Cucsa.340200 Cucumis sativus Cucsa.340200 N
Eucgr.E02743 Eucalyptus grandis Eucgr.E02743 I
evm.TU.supercontig_92.83 Carica papaya evm.TU.supercontig_92.83 N
F775_10096 Aegilops tauschii F775_10096 I
gene14814-v1.0-hybrid Fragaria vesca gene14814-v1.0-hybrid N
GLYMA02G23590 Glycine max GLYMA02G23590 N
GLYMA03G28150 Glycine max GLYMA03G28150 N
GLYMA19G30910 Glycine max GLYMA19G30910 N
Gorai.007G352300 Gossypium raimondii Gorai.007G352300 N
GRMZM2G027068 Zea mays GRMZM2G027068 N
GSMUA_Achr5G29390_001 Musa acuminata GSMUA_Achr5G29390_001 N
GSMUA_Achr8G23980_001 Musa acuminata GSMUA_Achr8G23980_001 N
Lus10018020.g Linum usitatissimum Lus10018020.g N
Lus10042017.g Linum usitatissimum Lus10042017.g N
MDP0000138102 Malus domestica MDP0000138102 N
MDP0000213892 Malus domestica MDP0000213892 N
mgf009382m Mimulus guttatus mgf009382m N
MLOC_66385 Hordeum vulgare MLOC_66385 I
orange1.1g026479m.g Citrus sinensis orange1.1g026479m.g N
ORGLA03G0352000 Oryza glaberrima ORGLA03G0352000 N
OS03G0811400 Oryza sativa OS03G0811400 N
Pavir.J02699 Panicum virgatum Pavir.J02699 N
Pavir.J24868 Panicum virgatum Pavir.J24868 N
PGSC0003DMG400008378 Solanum tuberosum PGSC0003DMG400008378 N
PK23387.1 Cannabis sativa PK23387.1 N
Pm025589 Prunus mume Pm025589 N
POPTR_0006s03550 Populus trichocarpa POPTR_0006s03550 N
POPTR_0016s03460 Populus trichocarpa POPTR_0016s03460 N
PRUPE_ppa011532mg Prunus persica PRUPE_ppa011532mg N
SapurV1A.0159s0020 Salix purpurea SapurV1A.0159s0020 N
SapurV1A.0189s0140 Salix purpurea SapurV1A.0189s0140 N
SapurV1A.1185s0010 Salix purpurea SapurV1A.1185s0010 I
SapurV1A.1821s0030 Salix purpurea SapurV1A.1821s0030 I
Sb01g003830 Sorghum bicolor Sb01g003830 N
Solyc10g078380.1 Solanum lycopersicum Solyc10g078380.1 N
TCM_024016 Theobroma cacao TCM_024016 N
Thhalv10006410m.g Eutrema salsugineum Thhalv10006410m.g N
Thhalv10017546m.g Eutrema salsugineum Thhalv10017546m.g N
Traes_4AS_DD16F89E7 Triticum aestivum Traes_4AS_DD16F89E7 I
Traes_4BL_A2B32FCEE Triticum aestivum Traes_4BL_A2B32FCEE I
Traes_4DL_7BD3165FB Triticum aestivum Traes_4DL_7BD3165FB I
Traes_5BL_CBFAD4B59 Triticum aestivum Traes_5BL_CBFAD4B59 N
TRIUR3_31897 Triticum urartu TRIUR3_31897 I
VIT_08s0040g01240 Vitis vinifera VIT_08s0040g01240 I