Afo_R011605 (Aptenodytes forsteri)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02257 (RFX_DNA_binding) IPR003150 Afo_R011605 T318944_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.788 0.974
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.788 0.974
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.788 0.974
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.788 0.974
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.705 0.590
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.705 0.590
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.705 0.590
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.705 0.590
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.705 0.590
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.705 0.590
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.705 0.590
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.705 0.590
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.705 0.590
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.705 0.590
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.705 0.590
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.705 0.590
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.705 0.590
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.705 0.590
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.705 0.590
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Afo_R011605 RFX 8 85

Links

Other RFX family TFs
Other Aptenodytes forsteri TFs

233 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AALB010330 Anopheles albimanus AALB010330 I
Aan_R013029 Calypte anna Aan_R013029 I
AARA002865 Anopheles arabiensis AARA002865 I
AATE014419 Anopheles atroparvus AATE014419 I
ACEP22947 Atta cephalotes ACEP22947 I
ACHR004409 Anopheles christyi ACHR004409 I
ACOM041529 Anopheles coluzzii ACOM041529 I
ACUA010350 Anopheles culicifacies ACUA010350 I
ACYPI007722 Acyrthosiphon pisum ACYPI007722 I
ADAC003479 Anopheles darlingi ADAC003479 I
AEPI003553 Anopheles epiroticus AEPI003553 I
AFAF000230 Anopheles farauti AFAF000230 I
Afo_R003215 Aptenodytes forsteri Afo_R003215 I
Afo_R012023 Aptenodytes forsteri Afo_R012023 I
Alligator_sinensis_CCG000393.1 Alligator sinensis Alligator_sinensis_CCG000393.1 I
Alligator_sinensis_CCG017609.1 Alligator sinensis Alligator_sinensis_CCG017609.1 I
AMEC016105 Anopheles melas AMEC016105 I
AMEM017983 Anopheles merus AMEM017983 I
AQUA007473 Anopheles quadriannulatus AQUA007473 I
ASIS004664 Anopheles sinensis ASIS004664 I
ASTEI06456 Anopheles stephensi ASTEI06456 I
BGIBMGA011565 Bombyx mori BGIBMGA011565 I
BGLB009291 Biomphalaria glabrata BGLB009291 I
Brh_R001594 Buceros rhinoceros Brh_R001594 I
Brh_R003197 Buceros rhinoceros Brh_R003197 I
BTMF_0000130101 Brugia timori BTMF_0000130101 I
Cflo_00077--XP_394171.3_APIME Camponotus floridanus Cflo_00077--XP_394171.3_APIME I
CPIJ010142 Culex quinquefasciatus CPIJ010142 I
CpipJ_CPIJ010142 Culex pipiens CpipJ_CPIJ010142 I
csin100403 Clonorchis sinensis csin100403 N
DILT_0000082701 Diphyllobothrium latum DILT_0000082701 I
EmuJ_001076400 Echinococcus multilocularis EmuJ_001076400 I
ENSACAG00000003097 Anolis carolinensis ENSACAG00000003097 I
EBF3 Anolis carolinensis ENSACAG00000008590 I
ENSACAG00000010823 Anolis carolinensis ENSACAG00000010823 I
ENSAMEG00000006442 Ailuropoda melanoleuca ENSAMEG00000006442 I
ENSAMXG00000001200 Astyanax mexicanus ENSAMXG00000001200 I
ENSAMXG00000003402 Astyanax mexicanus ENSAMXG00000003402 I
ENSAPLG00000009260 Anas platyrhynchos ENSAPLG00000009260 I
EBF3 Bos taurus ENSBTAG00000008272 I
ENSBTAP00000053340-D1 Bos grunniens ENSBTAP00000053340-D1 I
ENSCING00000003209 Ciona intestinalis ENSCING00000003209 I
EBF4 Callithrix jacchus ENSCJAG00000021027 I
ENSCSAG00000010520 Chlorocebus sabaeus ENSCSAG00000010520 I
ENSCSAVG00000000458 Ciona savignyi ENSCSAVG00000000458 I
ebf1b Danio rerio ENSDARG00000069196 I
EBF3 Dasypus novemcinctus ENSDNOG00000002588 I
EBF1 Dasypus novemcinctus ENSDNOG00000035396 I
EBF1 Equus caballus ENSECAG00000007964 I
ENSFALG00000011234 Ficedula albicollis ENSFALG00000011234 I
ENSFCAG00000027202 Felis catus ENSFCAG00000027202 I
EBF1 Homo sapiens ENSG00000164330 D
ebf2 Gasterosteus aculeatus ENSGACG00000008451 I
EBF1 Gasterosteus aculeatus ENSGACG00000020458 I
EBF2 Gallus gallus ENSGALG00000000242 I
EBF1 Gorilla gorilla ENSGGOG00000000033 I
ENSGMOG00000012325 Gadus morhua ENSGMOG00000012325 I
ENSLACG00000005494 Latimeria chalumnae ENSLACG00000005494 I
ENSLACG00000017271 Latimeria chalumnae ENSLACG00000017271 I
EBF1 Loxodonta africana ENSLAFG00000017522 I
EBF2 Meleagris gallopavo ENSMGAG00000000791 I
ENSMGAG00000016563 Meleagris gallopavo ENSMGAG00000016563 I
ENSMLUG00000004376 Myotis lucifugus ENSMLUG00000004376 I
EBF3 Myotis lucifugus ENSMLUG00000005478 I
EBF2 Myotis lucifugus ENSMLUG00000011509 I
EBF4 Macaca mulatta ENSMMUG00000021331 I
EBF1 Macaca mulatta ENSMMUG00000021696 I
ENSMMUP00000028570 Macaca fascicularis ENSMMUP00000028570 I
ENSMPUG00000013414 Mustela putorius furo ENSMPUG00000013414 I
Ebf4 Mus musculus ENSMUSG00000053552 D
ENSOANG00000004212 Ornithorhynchus anatinus ENSOANG00000004212 I
ENSOARG00000012836 Ovis aries ENSOARG00000012836 I
ENSP00000347463-D1 Bos grunniens ENSP00000347463-D1 I
ENSP00000405003 Macaca fascicularis ENSP00000405003 I
ENSPANG00000010656 Papio anubis ENSPANG00000010656 I
ENSPFOG00000002559 Poecilia formosa ENSPFOG00000002559 I
ENSPMAG00000003287 Petromyzon marinus ENSPMAG00000003287 I
ENSPMAG00000004238 Petromyzon marinus ENSPMAG00000004238 I
ENSPSIG00000005604 Pelodiscus sinensis ENSPSIG00000005604 I
Ebf1 Rattus norvegicus ENSRNOG00000028845 I
EBF1 Sus scrofa ENSSSCG00000017046 I
ENSSTOG00000007966 Ictidomys tridecemlineatus ENSSTOG00000007966 I
ENSSTOG00000011505 Ictidomys tridecemlineatus ENSSTOG00000011505 I
EBF1 Tupaia belangeri ENSTBEG00000007800 I
EBF2 Taeniopygia guttata ENSTGUG00000004267 I
EBF1 Tetraodon nigroviridis ENSTNIG00000016148 I
ENSXMAG00000006633 Xiphophorus maculatus ENSXMAG00000006633 I
ENSXMAG00000010351 Xiphophorus maculatus ENSXMAG00000010351 I
estExt_gwp.C_3380002 Branchiostoma floridae estExt_gwp.C_3380002 I
estExt_gwp.C_3810003 Branchiostoma floridae estExt_gwp.C_3810003 I
GH12956 Drosophila grimshawi FBgn0120434 I
GJ21945 Drosophila virilis FBgn0209060 I
Gfo_R013267 Geospiza fortis Gfo_R013267 I
GPLIN_000159400 Globodera pallida GPLIN_000159400 I
Hba_09581 Heterorhabditis bacteriophora Hba_09581 I
HelroG112029 Helobdella robusta HelroG112029 I
HMEL014948 Heliconius melpomene HMEL014948 I
Hsal_03263--XP_394171.3_APIME Harpegnathos saltator Hsal_03263--XP_394171.3_APIME I
LCUP013862 Lucilia cuprina LCUP013862 I
LotgiG225788 Lottia gigantea LotgiG225788 I
MCINX016126 Melitaea cinxia MCINX016126 I
MDOA011385 Musca domestica MDOA011385 I
Myotis_brandtii_Ebf1_10034833 Myotis brandtii Myotis_brandtii_Ebf1_10034833 I
Myotis_brandtii_Ebf3_10024819 Myotis brandtii Myotis_brandtii_Ebf3_10024819 I
nDi.2.2.2.g04990 Dirofilaria immitis nDi.2.2.2.g04990 I
nRc.2.0.1.g06532 Romanomermis culicivorax nRc.2.0.1.g06532 I
nRc.2.0.1.g14013 Romanomermis culicivorax nRc.2.0.1.g14013 I
Ocbimv22038949m.g Octopus bimaculoides Ocbimv22038949m.g I
OESDEN_10293 Oesophagostomum dentatum OESDEN_10293 I
OFLC_0000294401 Onchocerca flexuosa OFLC_0000294401 I
Ppa-unc-3 Pristionchus pacificus PPA20518 I
Pvit_11383 Pogona vitticeps Pvit_11383 I
Pvit_12046 Pogona vitticeps Pvit_12046 I
Pvit_12666 Pogona vitticeps Pvit_12666 I
Sakowv30011033m.g Saccoglossus kowalevskii Sakowv30011033m.g I
scaffold24-EXSNAP2012.58 Pristionchus exspectatus scaffold24-EXSNAP2012.58 I
Sjc_0015600 Schistosoma japonicum Sjc_0015600 I
SMU15024001 Schmidtea mediterranea SMU15024001 I
SPU_004702 Strongylocentrotus purpuratus SPU_004702 I
SROB_0000545801 Schistosoma rodhaini SROB_0000545801 I
T265_13606 Opisthorchis viverrini T265_13606 N
Tal_R004164 Tyto alba Tal_R004164 I
ebf2 Xenopus tropicalis XB-GENE-971136 I
ebf2.S Xenopus laevis XB-GENE-971141 I
YQE_08127 Dendroctonus ponderosae YQE_08127 I