CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

ENSONIG00000001436 *(Oreochromis niloticus)* Runt
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00853 (Runt)	IPR013524	ENSONIG00000001436	T319448_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Runx1 M08163_2.00	Mus musculus	HRRCCACARVN	NBYTGTGGYYD	ChIP-seq Mathelier et al.(2014) MA0002.2	0.762	0.762
RUNX1 M09371_2.00	Homo sapiens	NWAACCACARV	BYTGTGGTTWN	Misc Kulakovskiy et al.(2013) RUNX1_HUMAN.H11MO.0.A	0.762	0.762
Runx1 M09372_2.00	Mus musculus	VWRACCACARVV	BBYTGTGGTYWB	Misc Kulakovskiy et al.(2013) RUNX1_MOUSE.H11MO.0.A	0.762	0.762
RUNX1 M09632_2.00	Homo sapiens	HAACCACADV	BHTGTGGTTD	Misc Heinz et al.(2010) Jurkat-RUNX1_GSE29180	0.762	0.762
RUNX1 M09631_2.00	Homo sapiens	VCCACWTCCTBY	RVAGGAWGTGGB	Misc Heinz et al.(2010) Jurkat-RUNX1_GSE17954	0.762	0.762
Runx1 M09633_2.00	Mus musculus	NWAACCACAR	YTGTGGTTWN	Misc Heinz et al.(2010) HPC7-Runx1_GSE22178	0.762	0.762
RUNX1 M11258_2.00	Homo sapiens	ACCRCA	TGYGGT	Transfac Matys et al.(2006) V$AML1_01	0.762	0.762
RUNX1 M11259_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML1_Q4_01	0.762	0.762
RUNX1 M11260_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML1_Q4_02	0.762	0.762
RUNX1 M11261_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML1_Q4	0.762	0.762
RUNX1 M11262_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML1_Q5	0.762	0.762
RUNX1 M11263_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML1_Q6	0.762	0.762
Runx2 M01307_2.00	Mus musculus	NHDACCRCAN	NTGYGGTHDN	PBM Lambert et al.(2019) pTH9764	0.746	0.746
RUNX2 M03468_2.00	Homo sapiens	HRACCGCAAACCRCRD	HYGYGGTTTGCGGTYD	SELEX Jolma et al.(2013) RUNX2_1	0.746	0.746
RUNX2 M03469_2.00	Homo sapiens	HRACCRCADWWACCRCAD	HTGYGGTWWHTGYGGTYD	SELEX Jolma et al.(2013) RUNX2_2	0.746	0.746
RUNX2 M03470_2.00	Homo sapiens	WAACCRCAR	YTGYGGTTW	SELEX Jolma et al.(2013) RUNX2_3	0.746	0.746
RUNX2 M05733_2.00	Homo sapiens	NHRACCRCADWAACCRCAVN	NBTGYGGTTWHTGYGGTYDN	SELEX Yin et al.(2017) RUNX2_eDBD_HT-SELEX	0.746	0.746
RUNX2 M09370_2.00	Homo sapiens	MMHAACCACAVVMH	DKBBTGTGGTTDKK	Misc Kulakovskiy et al.(2013) RUNX2_HUMAN.H11MO.0.A	0.746	0.746
Runx2 M09373_2.00	Mus musculus	VWRACCACARVV	BBYTGTGGTYWB	Misc Kulakovskiy et al.(2013) RUNX2_MOUSE.H11MO.0.A	0.746	0.746
RUNX2 M09630_2.00	Homo sapiens	NHVACCACANNN	NNNTGTGGTBDN	Misc Heinz et al.(2010) PCa-RUNX2_GSE33889	0.746	0.746
RUNX2 M11255_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML3_Q3	0.746	0.746
RUNX2 M11256_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML3_Q6	0.746	0.746
RUNX2 M11257_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$OSF2_Q6	0.746	0.746
RUNX2 M05734_2.00	Homo sapiens	NWAACCACRAAAACCACRRN	NYYGTGGTTTTYGTGGTTWN	SELEX Yin et al.(2017) RUNX2_eDBD_Methyl-HT-SELEX	0.746	0.746
RUNX3 M03464_2.00	Homo sapiens	HRACCGCAAACCRCAN	NTGYGGTTTGCGGTYD	SELEX Jolma et al.(2013) RUNX3_1	0.738	0.738
RUNX3 M03465_2.00	Homo sapiens	WAACCRCARN	NYTGYGGTTW	SELEX Jolma et al.(2013) RUNX3_2	0.738	0.738
RUNX3 M03466_2.00	Homo sapiens	HDACCRCADWAACCRCRN	NYGYGGTTWHTGYGGTHD	SELEX Jolma et al.(2013) RUNX3_3	0.738	0.738
RUNX3 M03467_2.00	Homo sapiens	HRACCRCAAH	DTTGYGGTYD	SELEX Jolma et al.(2013) RUNX3_4	0.738	0.738
RUNX3 M02751_2.00	Homo sapiens	WACCRCAM	KTGYGGTW	SELEX Jolma et al.(2010) RUNX3_monomer	0.738	0.738
RUNX3 M05731_2.00	Homo sapiens	YWAACCGCAAAAACCGCARV	BYTGCGGTTTTTGCGGTTWR	SELEX Yin et al.(2017) RUNX3_FL_HT-SELEX	0.738	0.738
RUNX3 M09369_2.00	Homo sapiens	HAACCACARN	NYTGTGGTTD	Misc Kulakovskiy et al.(2013) RUNX3_HUMAN.H11MO.0.A	0.738	0.738
Runx3 M09374_2.00	Mus musculus	NHRACCACARVN	NBYTGTGGTYDN	Misc Kulakovskiy et al.(2013) RUNX3_MOUSE.H11MO.0.A	0.738	0.738
RUNX3 M11252_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML2_Q3_01	0.738	0.738
RUNX3 M11253_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML2_Q3	0.738	0.738
RUNX3 M11254_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML2_Q4	0.738	0.738
RUNX3 M05732_2.00	Homo sapiens	HWAACCACRAAAACCACRARN	NYTYGTGGTTTTYGTGGTTWD	SELEX Yin et al.(2017) RUNX3_FL_Methyl-HT-SELEX	0.738	0.738
For this family, TFs with SR scores > 0.700* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSONIP00000001808	Runt	41	171	LHQCSTAPPRGLVPTDSPNFLCSSLPQHWRCNKTLPRAFTVVALGNDVPDGVVVTVMAGNDENVSAELRNATATMKQGCAHFNDLRFIGRSGRGKSFTLTINVLTSPPQIATLHRAIKITVDGPRLPRRQR

Links
Other Runt family TFs
Other *Oreochromis niloticus* TFs

170 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AMTR_s00057p00206030	Amborella trichopoda	AMTR_s00057p00206030	N	0.000
Aquca_017_00223	Aquilegia coerulea	Aquca_017_00223	N	0.000
BGIOSGA005119	Oryza indica	BGIOSGA005119	N	0.000
BRADI2G59937	Brachypodium distachyon	BRADI2G59937	N	0.000
cassava29582.valid.m1	Manihot esculenta	cassava29582.valid.m1	N	0.000
cassava29583.valid.m1	Manihot esculenta	cassava29583.valid.m1	N	0.000
Ciclev10018617m.g	Citrus clementina	Ciclev10018617m.g	N	0.000
GSMUA_Achr1G11230_001	Musa acuminata	GSMUA_Achr1G11230_001	N	0.000
LPERR01G37480	Leersia perrieri	LPERR01G37480	N	0.000
OB01G52060	Oryza brachyantha	OB01G52060	N	0.000
OBART01G43050	Oryza barthii	OBART01G43050	N	0.000
OGLUM01G47350	Oryza glumaepatula	OGLUM01G47350	N	0.000
OLONG_017231	Oryza longistaminata	OLONG_017231	N	0.000
ONIVA01G48990	Oryza nivara	ONIVA01G48990	N	0.000
OPUNC01G42000	Oryza punctata	OPUNC01G42000	N	0.000
ORGLA01G0367900	Oryza glaberrima	ORGLA01G0367900	N	0.000
ORUFI01G46480	Oryza rufipogon	ORUFI01G46480	N	0.000
OS01G0934300	Oryza sativa	OS01G0934300	N	0.000
PDK_20s1602441g001	Phoenix dactylifera	PDK_20s1602441g001	N	0.000
PK02496.1	Cannabis sativa	PK02496.1	N	0.000
POPTR_0002s20990	Populus trichocarpa	POPTR_0002s20990	N	0.000
POPTR_0014s12730	Populus trichocarpa	POPTR_0014s12730	N	0.000
SapurV1A.0155s0080	Salix purpurea	SapurV1A.0155s0080	N	0.000
Solyc09g074690.2	Solanum lycopersicum	Solyc09g074690.2	N	0.000
TCM_004566	Theobroma cacao	TCM_004566	N	0.000
Traes_3B_3142C10C9	Triticum aestivum	Traes_3B_3142C10C9	N	0.000
Traes_3DL_D4FBDA9DC	Triticum aestivum	Traes_3DL_D4FBDA9DC	N	0.000
TRIUR3_34541	Triticum urartu	TRIUR3_34541	N	0.000
LD	Vitis vinifera	VIT_07s0104g01580	N	0.000

ENSONIG00000001436 (Oreochromis niloticus) Runt

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

170 Related TFs

ENSONIG00000001436 **(Oreochromis niloticus)
Runt**