POPTR_0016s04220 (Populus trichocarpa)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02042 (RWP-RK) IPR003035 POPTR_0016s04220 T320752_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NLP4
M07248_2.00 		Arabidopsis thaliana
NNHNNBTGCTGYHNN
NNDRCAGCAVNNDNN		 Dap-seq
OMalley et al.(2016)
AtNLP4_col_b 		0.857 0.857
NLP7
M07251_2.00 		Arabidopsis thaliana
WNDTGNCYYTTSRDD
HHYSAARRGNCAHNW		 Dap-seq
OMalley et al.(2016)
NLP7_col_a 		0.857 0.857
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0016s04220.1 RWP-RK 602 650

Links

Other RWP-RK family TFs
Other Populus trichocarpa TFs

416 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30115.m001183 Ricinus communis 30115.m001183 N
cassava2445.valid.m1 Manihot esculenta cassava2445.valid.m1 N
Ciclev10025376m.g Citrus clementina Ciclev10025376m.g N
Eucgr.H01651 Eucalyptus grandis Eucgr.H01651 N
Eucgr.H02009 Eucalyptus grandis Eucgr.H02009 N
evm.TU.supercontig_55.163 Carica papaya evm.TU.supercontig_55.163 N
gene24052-v1.0-hybrid Fragaria vesca gene24052-v1.0-hybrid N
GLYMA17G20175 Glycine max GLYMA17G20175 N
Gorai.007G212100 Gossypium raimondii Gorai.007G212100 N
MDP0000258417 Malus domestica MDP0000258417 N
MDP0000314333 Malus domestica MDP0000314333 N
mgf012891m Mimulus guttatus mgf012891m N
orange1.1g010160m.g Citrus sinensis orange1.1g010160m.g N
PGSC0003DMG400015771 Solanum tuberosum PGSC0003DMG400015771 N
PK03938.1 Cannabis sativa PK03938.1 N
Solyc02g090710.2 Solanum lycopersicum Solyc02g090710.2 N
TCM_000597 Theobroma cacao TCM_000597 N
VIT_07s0031g00780 Vitis vinifera VIT_07s0031g00780 N