Ciclev10027765m.g (Citrus clementina)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02042 (RWP-RK) IPR003035 Ciclev10027765m.g T321108_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NLP4
M07248_2.00 		Arabidopsis thaliana
NNHNNBTGCTGYHNN
NNDRCAGCAVNNDNN		 Dap-seq
OMalley et al.(2016)
AtNLP4_col_b 		0.918 0.918
NLP7
M07251_2.00 		Arabidopsis thaliana
WNDTGNCYYTTSRDD
HHYSAARRGNCAHNW		 Dap-seq
OMalley et al.(2016)
NLP7_col_a 		0.878 0.878
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10027765m RWP-RK 627 675

Links

Other RWP-RK family TFs
Other Citrus clementina TFs

411 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29889.m003248 Ricinus communis 29889.m003248 I 0.000
30128.m008883 Ricinus communis 30128.m008883 N 0.000
AMTR_s00025p00250380 Amborella trichopoda AMTR_s00025p00250380 N 0.000
AMTR_s00147p00053080 Amborella trichopoda AMTR_s00147p00053080 N 0.000
GATA16 Arabidopsis thaliana AT5G49300 D 0.000
BGIOSGA000005 Oryza indica BGIOSGA000005 I 0.000
BGIOSGA013867 Oryza indica BGIOSGA013867 I 0.000
BGIOSGA013869 Oryza indica BGIOSGA013869 I 0.000
Bo00847s050 Brassica oleracea Bo00847s050 I 0.000
Bostr.15774s0060 Boechera stricta Bostr.15774s0060 I 0.000
Bra020650 Brassica rapa Bra020650 I 0.000
BRADI1G03020 Brachypodium distachyon BRADI1G03020 I 0.000
BRADI2G62660 Brachypodium distachyon BRADI2G62660 I 0.000
Carubv10027332m.g Capsella rubella Carubv10027332m.g I 0.000
cassava15577.m1 Manihot esculenta cassava15577.m1 I 0.000
cassava15588.m1 Manihot esculenta cassava15588.m1 I 0.000
cassava37139.valid.m1 Manihot esculenta cassava37139.valid.m1 I 0.000
cassava43030.valid.m1 Manihot esculenta cassava43030.valid.m1 I 0.000
Ca_02992 Cicer arietinum Ca_02992 I 0.000
Ciclev10003698m.g Citrus clementina Ciclev10003698m.g I 0.000
Ciclev10006161m.g Citrus clementina Ciclev10006161m.g I 0.000
Ciclev10022856m.g Citrus clementina Ciclev10022856m.g I 0.000
Cla005266 Citrullus lanatus Cla005266 N 0.000
Cla009422 Citrullus lanatus Cla009422 I 0.000
Cla022104 Citrullus lanatus Cla022104 I 0.000
CME102C Cyanidioschyzon merolae CME102C N 0.000
Cucsa.069460 Cucumis sativus Cucsa.069460 I 0.000
Cucsa.252730 Cucumis sativus Cucsa.252730 I 0.000
Eucgr.A00193 Eucalyptus grandis Eucgr.A00193 I 0.000
Eucgr.H04023 Eucalyptus grandis Eucgr.H04023 I 0.000
evm.TU.supercontig_151.51 Carica papaya evm.TU.supercontig_151.51 I 0.000
evm.TU.supercontig_48.133 Carica papaya evm.TU.supercontig_48.133 I 0.000
evm.TU.supercontig_9.102 Carica papaya evm.TU.supercontig_9.102 I 0.000
gene05175-v1.0-hybrid Fragaria vesca gene05175-v1.0-hybrid I 0.000
GLYMA07G37190 Glycine max GLYMA07G37190 I 0.000
GLYMA17G03410 Glycine max GLYMA17G03410 I 0.000
Gorai.005G065300 Gossypium raimondii Gorai.005G065300 I 0.000
Gorai.007G125000 Gossypium raimondii Gorai.007G125000 I 0.000
Gorai.008G142200 Gossypium raimondii Gorai.008G142200 I 0.000
Gorai.013G127900 Gossypium raimondii Gorai.013G127900 I 0.000
Gorai.013G206400 Gossypium raimondii Gorai.013G206400 N 0.000
GRMZM2G138967 Zea mays GRMZM2G138967 N 0.000
GSMUA_Achr1G14780_001 Musa acuminata GSMUA_Achr1G14780_001 N 0.000
GSMUA_Achr7G03800_001 Musa acuminata GSMUA_Achr7G03800_001 N 0.000
GSMUA_Achr8G33850_001 Musa acuminata GSMUA_Achr8G33850_001 N 0.000
LjSGA_011217.1 Lotus japonicus LjSGA_011217.1 I 0.000
LPERR03G33900 Leersia perrieri LPERR03G33900 I 0.000
LPERR04G11580 Leersia perrieri LPERR04G11580 I 0.000
Lus10016849.g Linum usitatissimum Lus10016849.g I 0.000
Lus10020684.g Linum usitatissimum Lus10020684.g N 0.000
Lus10029863.g Linum usitatissimum Lus10029863.g N 0.000
Lus10031464.g Linum usitatissimum Lus10031464.g I 0.000
Lus10037721.g Linum usitatissimum Lus10037721.g I 0.000
MDP0000309902 Malus domestica MDP0000309902 I 0.000
mgf003937m Mimulus guttatus mgf003937m I 0.000
mgf011737m Mimulus guttatus mgf011737m N 0.000
mgf022078m Mimulus guttatus mgf022078m I 0.000
MLOC_54886 Hordeum vulgare MLOC_54886 I 0.000
MTR_4g121110 Medicago truncatula MTR_4g121110 I 0.000
OB01G55040 Oryza brachyantha OB01G55040 I 0.000
OBART01G45830 Oryza barthii OBART01G45830 I 0.000
OBART03G39750 Oryza barthii OBART03G39750 I 0.000
OGLUM01G50190 Oryza glumaepatula OGLUM01G50190 I 0.000
OGLUM03G39650 Oryza glumaepatula OGLUM03G39650 I 0.000
OLONG_011157 Oryza longistaminata OLONG_011157 I 0.000
OLONG_023900 Oryza longistaminata OLONG_023900 I 0.000
OMERI03G36600 Oryza meridionalis OMERI03G36600 I 0.000
ONIVA01G52080 Oryza nivara ONIVA01G52080 I 0.000
ONIVA03G41600 Oryza nivara ONIVA03G41600 I 0.000
OPUNC03G36900 Oryza punctata OPUNC03G36900 I 0.000
OPUNC03G36910 Oryza punctata OPUNC03G36910 I 0.000
orange1.1g030971m.g Citrus sinensis orange1.1g030971m.g I 0.000
orange1.1g032112m.g Citrus sinensis orange1.1g032112m.g I 0.000
orange1.1g033001m.g Citrus sinensis orange1.1g033001m.g I 0.000
ORGLA01G0395900 Oryza glaberrima ORGLA01G0395900 I 0.000
ORUFI01G49320 Oryza rufipogon ORUFI01G49320 I 0.000
ORUFI03G41540 Oryza rufipogon ORUFI03G41540 I 0.000
OS01G0976800 Oryza sativa OS01G0976800 I 0.000
OS03G0831200 Oryza sativa OS03G0831200 I 0.000
Pavir.Ab00108 Panicum virgatum Pavir.Ab00108 N 0.000
Pavir.Eb04066 Panicum virgatum Pavir.Eb04066 I 0.000
PGSC0003DMG400004624 Solanum tuberosum PGSC0003DMG400004624 I 0.000
PK18820.1 Cannabis sativa PK18820.1 I 0.000
PK21934.1 Cannabis sativa PK21934.1 I 0.000
Pm003128 Prunus mume Pm003128 I 0.000
Pm008287 Prunus mume Pm008287 I 0.000
POPTR_0005s02040 Populus trichocarpa POPTR_0005s02040 I 0.000
POPTR_0008s22950 Populus trichocarpa POPTR_0008s22950 I 0.000
POPTR_0010s00360 Populus trichocarpa POPTR_0010s00360 I 0.000
PRUPE_ppa013171mg Prunus persica PRUPE_ppa013171mg I 0.000
PRUPE_ppa015310mg Prunus persica PRUPE_ppa015310mg I 0.000
SapurV1A.0107s0060 Salix purpurea SapurV1A.0107s0060 I 0.000
SapurV1A.0186s0560 Salix purpurea SapurV1A.0186s0560 I 0.000
SapurV1A.0739s0060 Salix purpurea SapurV1A.0739s0060 I 0.000
SapurV1A.2413s0010 Salix purpurea SapurV1A.2413s0010 I 0.000
GATA16 Arabidopsis lyrata scaffold_801309.1 I 0.000
Si002983m.g Setaria italica Si002983m.g I 0.000
Solyc12g099370.1 Solanum lycopersicum Solyc12g099370.1 I 0.000
TCM_004753 Theobroma cacao TCM_004753 I 0.000
TCM_021303 Theobroma cacao TCM_021303 I 0.000
TCM_026732 Theobroma cacao TCM_026732 I 0.000
Thhalv10005103m.g Eutrema salsugineum Thhalv10005103m.g I 0.000
TRAES3BF026000060CFD_g Triticum aestivum TRAES3BF026000060CFD_g I 0.000
Traes_3AL_6DE434492 Triticum aestivum Traes_3AL_6DE434492 I 0.000
TRIUR3_03165 Triticum urartu TRIUR3_03165 I 0.000
VIT_05s0077g01450 Vitis vinifera VIT_05s0077g01450 I 0.000
VIT_14s0060g01520 Vitis vinifera VIT_14s0060g01520 I 0.000