orange1.1g001774m.g (Citrus sinensis)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02042 (RWP-RK) IPR003035 orange1.1g001774m.g T321203_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NLP7
M07251_2.00 		Arabidopsis thaliana
WNDTGNCYYTTSRDD
HHYSAARRGNCAHNW		 Dap-seq
OMalley et al.(2016)
NLP7_col_a 		0.857 0.857
NLP4
M07248_2.00 		Arabidopsis thaliana
NNHNNBTGCTGYHNN
NNDRCAGCAVNNDNN		 Dap-seq
OMalley et al.(2016)
AtNLP4_col_b 		0.816 0.816
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g001774m RWP-RK 606 654
orange1.1g001809m RWP-RK 601 649

Links

Other RWP-RK family TFs
Other Citrus sinensis TFs

422 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA003304 Oryza indica BGIOSGA003304 N 0.000
GRMZM5G839969 Zea mays GRMZM5G839969 N 0.000
GRMZM5G853066 Zea mays GRMZM5G853066 N 0.000
ONIVA01G14280 Oryza nivara ONIVA01G14280 N 0.000
OPUNC01G11730 Oryza punctata OPUNC01G11730 N 0.000
ORUFI01G13020 Oryza rufipogon ORUFI01G13020 N 0.000
Pavir.Ab01824 Panicum virgatum Pavir.Ab01824 N 0.000
Pavir.Ib03850 Panicum virgatum Pavir.Ib03850 N 0.000
Pavir.J14267 Panicum virgatum Pavir.J14267 N 0.000
Si019470m.g Setaria italica Si019470m.g N 0.000