Thhalv10007832m.g (Eutrema salsugineum)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Thhalv10007832m.g T323683_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL11
M02471_2.00 		Arabidopsis thaliana
NNNHGTACGGWN
NWCCGTACDNNN		 PBM
Weirauch et al.(2014)
pTH9392 		0.982 0.933
SPL11
M07254_2.00 		Arabidopsis thaliana
HTGTACTDDHH
DDHHAGTACAD		 Dap-seq
OMalley et al.(2016)
SPL11_col100_a 		0.982 0.933
SPL10
M01084_2.00 		Arabidopsis thaliana
NNGTACGRHN
NDYCGTACNN		 PBM
Sullivan et al.(2014)
pTH9749 		0.981 0.933
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10007828m SBP 175 249
Thhalv10007832m SBP 175 249

Links

Other SBP family TFs
Other Eutrema salsugineum TFs

37 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29929.m004641 Ricinus communis 29929.m004641 I 0.913
SPL11 Arabidopsis thaliana AT1G27360 D 0.982
SPL10 Arabidopsis thaliana AT1G27370 D 0.981
Bo3g141480 Brassica oleracea Bo3g141480 I 0.956
Bo5g051970 Brassica oleracea Bo5g051970 I 0.976
Bo5g051980 Brassica oleracea Bo5g051980 I 0.979
Bo7g049940 Brassica oleracea Bo7g049940 I 0.979
Bo7g049950 Brassica oleracea Bo7g049950 I 0.979
Bostr.15697s0062 Boechera stricta Bostr.15697s0062 I 0.987
Bostr.15697s0063 Boechera stricta Bostr.15697s0063 I 0.985
Bra010949 Brassica rapa Bra010949 I 0.976
Bra030040 Brassica rapa Bra030040 I 0.980
Bra030041 Brassica rapa Bra030041 I 0.980
Bra032822 Brassica rapa Bra032822 I 0.925
Bra032823 Brassica rapa Bra032823 I 0.977
BRADI3G05510 Brachypodium distachyon BRADI3G05510 I 0.888
Cagra.8874s0007 Capsella grandiflora Cagra.8874s0007 I 0.983
Cagra.8874s0008 Capsella grandiflora Cagra.8874s0008 I 0.987
Carubv10009364m.g Capsella rubella Carubv10009364m.g I 0.987
Carubv10009367m.g Capsella rubella Carubv10009367m.g I 0.983
Ca_08506 Cicer arietinum Ca_08506 I 0.941
Eucgr.B03500 Eucalyptus grandis Eucgr.B03500 I 0.941
evm.TU.supercontig_43.66 Carica papaya evm.TU.supercontig_43.66 I 0.904
SPL10 Arabidopsis lyrata fgenesh2_kg.1__2893__AT1G27370.2 I 0.990
Lus10006411.g Linum usitatissimum Lus10006411.g I 0.937
Lus10011356.g Linum usitatissimum Lus10011356.g I 0.926
mgf019346m Mimulus guttatus mgf019346m I 0.895
PGSC0003DMG400026736 Solanum tuberosum PGSC0003DMG400026736 I 0.888
POPTR_0001s13890 Populus trichocarpa POPTR_0001s13890 I 0.909
POPTR_0003s17120 Populus trichocarpa POPTR_0003s17120 I 0.909
SapurV1A.0001s2320 Salix purpurea SapurV1A.0001s2320 N 0.911
SapurV1A.0056s0240 Salix purpurea SapurV1A.0056s0240 I 0.909
SapurV1A.1271s0060 Salix purpurea SapurV1A.1271s0060 I 0.909
SPL11 Arabidopsis lyrata scaffold_103051.1 I 0.980
Thhalv10007882m.g Eutrema salsugineum Thhalv10007882m.g I 0.977
VIT_01s0010g03710 Vitis vinifera VIT_01s0010g03710 I 0.913