AMAG_00993 (Allomyces macrogynus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 AMAG_00993 T325986_2.00 Broad (2016-May-1)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.449 0.383
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.445 0.319
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.445 0.319
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.445 0.319
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.438 0.319
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.438 0.319
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AMAG_00993T0 Sox 48 94

Links

Other Sox family TFs
Other Allomyces macrogynus TFs

510 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL64 Arabidopsis thaliana AT1G29962 N
Bo5g061120 Brassica oleracea Bo5g061120 N
Bostr.15697s0292 Boechera stricta Bostr.15697s0292 N
Bra032347 Brassica rapa Bra032347 N
Cagra.5647s0017 Capsella grandiflora Cagra.5647s0017 N
Carubv10011216m.g Capsella rubella Carubv10011216m.g N
AGL85 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1002660 N