Phatr3_J48554 (Phaeodactylum tricornutum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Phatr3_J48554 T331927_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Phatr3_J48554.p1 Sox 237 258
Phatr3_J48554.p1 Sox 273 335

Links

Other Sox family TFs
Other Phaeodactylum tricornutum TFs

9 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh2_pg.9_#_353 Fragilariopsis cylindrus fgenesh2_pg.9_#_353 N 0.433
Phatr3_J39045 Phaeodactylum tricornutum Phatr3_J39045 N 0.578
Phatr3_J42576 Phaeodactylum tricornutum Phatr3_J42576 N 0.415
Thaps11719 Thalassiosira pseudonana Thaps11719 N 0.442
Thaps4075 Thalassiosira pseudonana Thaps4075 N 0.425
Thaps4076 Thalassiosira pseudonana Thaps4076 N 0.425
Thaps5285 Thalassiosira pseudonana Thaps5285 N 0.441
Thaps8895 Thalassiosira pseudonana Thaps8895 N 0.446
Thaps8898 Thalassiosira pseudonana Thaps8898 N 0.442