chr5.CM0260.560.nd (Lotus japonicus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 chr5.CM0260.560.nd T335181_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
chr5.CM0260.560.nd Sox 85 152

Links

Other Sox family TFs
Other Lotus japonicus TFs

11 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Eucgr.F01991 Eucalyptus grandis Eucgr.F01991 N 0.456
F775_20402 Aegilops tauschii F775_20402 N 0.510
GLYMA10G44031 Glycine max GLYMA10G44031 N 0.464
MLOC_42821 Hordeum vulgare MLOC_42821 I 0.510
PDK_20s1331851g001 Phoenix dactylifera PDK_20s1331851g001 N 0.546
PDK_20s1400562g001 Phoenix dactylifera PDK_20s1400562g001 N 0.627
PGSC0003DMG402018896 Solanum tuberosum PGSC0003DMG402018896 N 0.523
POPTR_0017s08230 Populus trichocarpa POPTR_0017s08230 N 0.635
SPU_005372 Strongylocentrotus purpuratus SPU_005372 N 0.435
Traes_6BS_165C5AFD9 Triticum aestivum Traes_6BS_165C5AFD9 N 0.510
Traes_6DS_C7F653F0F Triticum aestivum Traes_6DS_C7F653F0F N 0.510