SPAL_0001704100 (Strongyloides papillosus)
T-box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00907 (T-box) IPR001699 SPAL_0001704100 T341946_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tbx3
M00834_2.00 		Mus musculus
NHNDCACNHN
NDNGTGHNDN		 PBM
Weirauch et al.(2013)
pTH3998 		0.819 0.807
TBX3
M05801_2.00 		Homo sapiens
NDSGTGTBRN
NYVACACSHN		 SELEX
Yin et al.(2017)
TBX3_eDBD_HT-SELEX 		0.819 0.807
TBX3
M09426_2.00 		Homo sapiens
DVDGGTGBNAR
YTNVCACCHBH		 Misc
Kulakovskiy et al.(2013)
TBX3_HUMAN.H11MO.0.C 		0.819 0.807
Tbx3
M09429_2.00 		Mus musculus
RRGGTGBBR
YVVCACCYY		 Misc
Kulakovskiy et al.(2013)
TBX3_MOUSE.H11MO.0.B 		0.819 0.807
TBX3
M05802_2.00 		Homo sapiens
DAGGTGTKAN
NTMACACCTH		 SELEX
Yin et al.(2017)
TBX3_eDBD_Methyl-HT-SELEX 		0.819 0.807
Tbx2
M00830_2.00 		Mus musculus
NYVDCACBHN
NDVGTGHBRN		 PBM
Weirauch et al.(2013)
pTH3751 		0.819 0.801
TBX2
M03556_2.00 		Homo sapiens
GGTGTKADDWNTVACACB
VGTGTBANWHHTMACACC		 SELEX
Jolma et al.(2013)
TBX2_1 		0.819 0.801
TBX2
M03557_2.00 		Homo sapiens
NAGGTGTBAWN
NWTVACACCTN		 SELEX
Jolma et al.(2013)
TBX2_2 		0.819 0.801
TBX2
M05799_2.00 		Homo sapiens
NNVRCRCNNN
NNNGYGYBNN		 SELEX
Yin et al.(2017)
TBX2_eDBD_HT-SELEX 		0.819 0.801
Tbx2
M08044_2.00 		Mus musculus
GCHYBCTGGGADHTGTAGTYH
DRACTACADHTCCCAGVRDGC		 ChIP-seq
Chen et al.(2011)
SRP001585_Tbx2 		0.819 0.801
TBX2
M11381_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBX2_Q2 		0.819 0.801
TBX2
M11382_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBX2_Q5 		0.819 0.801
TBX2
M05800_2.00 		Homo sapiens
NNVRCRCBNN
NNVGYGYBNN		 SELEX
Yin et al.(2017)
TBX2_eDBD_Methyl-HT-SELEX 		0.819 0.801
TBX2
M02495_2.00 		Gasterosteus aculeatus
NNVDCACNHN
NDNGTGHBNN		 PBM
Weirauch et al.(2014)
pTH9182 		0.808 0.807
TBX2
M02496_2.00 		Takifugu rubripes
DAGGTGTBRN
NYVACACCTH		 PBM
Weirauch et al.(2014)
pTH9289 		0.808 0.801
XP_008203914.1
M01029_2.00 		Nasonia vitripennis
AGGTGTBA
TVACACCT		 PBM
SebePedros et al.(2013)
pTH9336 		0.789 0.746
estExt_fgenesh2_pg.C_1570024
M01030_2.00 		Branchiostoma floridae
NHNDCACNHN
NDNGTGHNDN		 PBM
SebePedros et al.(2013)
pTH9244 		0.763 0.685
For this family, TFs with SR scores > 0.734 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SPAL_0001704100.1 T-box 76 256

Links

Other T-box family TFs
Other Strongyloides papillosus TFs

196 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00133p00071910 Amborella trichopoda AMTR_s00133p00071910 I
BGIOSGA010923 Oryza indica BGIOSGA010923 I
cassava26191.m1 Manihot esculenta cassava26191.m1 N
cassava41279.m1 Manihot esculenta cassava41279.m1 N
Ciclev10013340m.g Citrus clementina Ciclev10013340m.g I
Ciclev10023930m.g Citrus clementina Ciclev10023930m.g N
Cucsa.197410 Cucumis sativus Cucsa.197410 N
Cucsa.339230 Cucumis sativus Cucsa.339230 N
estExt_Genewise1.C_360117 Physcomitrella patens estExt_Genewise1.C_360117 N
Eucgr.I02017 Eucalyptus grandis Eucgr.I02017 I
evm.TU.contig_28309.2 Carica papaya evm.TU.contig_28309.2 I
e_gw1.141.66.1 Physcomitrella patens e_gw1.141.66.1 N
e_gw1.204.95.1 Physcomitrella patens e_gw1.204.95.1 N
e_gw1.284.46.1 Physcomitrella patens e_gw1.284.46.1 N
GLYMA13G04920 Glycine max GLYMA13G04920 I
GLYMA19G02090 Glycine max GLYMA19G02090 I
Gorai.010G139300 Gossypium raimondii Gorai.010G139300 N
GRMZM2G308034 Zea mays GRMZM2G308034 I
GSMUA_Achr3G10060_001 Musa acuminata GSMUA_Achr3G10060_001 I
gw1.295.9.1 Physcomitrella patens gw1.295.9.1 N
gw1.65.181.1 Physcomitrella patens gw1.65.181.1 N
LPERR03G12200 Leersia perrieri LPERR03G12200 I
MLOC_44167 Hordeum vulgare MLOC_44167 I
OB03G23760 Oryza brachyantha OB03G23760 I
OBART03G13840 Oryza barthii OBART03G13840 I
OGLUM03G13980 Oryza glumaepatula OGLUM03G13980 I
OMERI03G12640 Oryza meridionalis OMERI03G12640 I
ONIVA03G15100 Oryza nivara ONIVA03G15100 I
OPUNC03G13320 Oryza punctata OPUNC03G13320 I
orange1.1g043557m.g Citrus sinensis orange1.1g043557m.g I
ORGLA03G0133600 Oryza glaberrima ORGLA03G0133600 I
ORUFI03G14500 Oryza rufipogon ORUFI03G14500 I
Pavir.Db01456 Panicum virgatum Pavir.Db01456 I
PDK_20s1379331g001 Phoenix dactylifera PDK_20s1379331g001 I
POPTR_0012s07450 Populus trichocarpa POPTR_0012s07450 N
POPTR_0015s07900 Populus trichocarpa POPTR_0015s07900 N
SapurV1A.1048s0030 Salix purpurea SapurV1A.1048s0030 I
Sb01g038250 Sorghum bicolor Sb01g038250 I
TCM_045715 Theobroma cacao TCM_045715 N
Traes_7AL_5B57EF9FC Triticum aestivum Traes_7AL_5B57EF9FC I
Traes_7DL_20EC9096A Triticum aestivum Traes_7DL_20EC9096A I
ATMYB35 Vitis vinifera VIT_14s0066g02180 N
VIT_17s0000g05400 Vitis vinifera VIT_17s0000g05400 I