Solyc07g053410.2 (Solanum lycopersicum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 Solyc07g053410.2 T344420_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.947 0.660
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.945 0.660
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.945 0.649
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.945 0.649
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.945 0.649
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.933 0.649
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.905 0.500
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.900 0.489
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.893 0.479
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.873 0.457
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.828 0.436
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.828 0.457
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.828 0.457
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc07g053410.2.1 TCP 22 152

Links

Other TCP family TFs
Other Solanum lycopersicum TFs

406 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29693.m001968 Ricinus communis 29693.m001968 I 0.879
29905.m000443 Ricinus communis 29905.m000443 I
30138.m003959 Ricinus communis 30138.m003959 I 0.823
AMTR_s00092p00113360 Amborella trichopoda AMTR_s00092p00113360 I 0.886
AMTR_s00154p00072430 Amborella trichopoda AMTR_s00154p00072430 I 0.842
Aquca_002_00878 Aquilegia coerulea Aquca_002_00878 I 0.824
Aquca_057_00119 Aquilegia coerulea Aquca_057_00119 I 0.904
TCP13 Arabidopsis thaliana AT3G02150 D 0.828
TCP17 Arabidopsis thaliana AT5G08070 D
TCP5 Arabidopsis thaliana AT5G60970 D
BGIOSGA000770 Oryza indica BGIOSGA000770 I 0.850
PCF5 Oryza indica BGIOSGA002128 I 0.933
BGIOSGA020173 Oryza indica BGIOSGA020173 I 0.864
PCF8 Oryza indica BGIOSGA037799 I 0.836
Bo2g161240 Brassica oleracea Bo2g161240 I
Bo3g004670 Brassica oleracea Bo3g004670 I 0.822
Bo3g055460 Brassica oleracea Bo3g055460 I 0.825
Bo5g152840 Brassica oleracea Bo5g152840 I 0.849
Bo7g098260 Brassica oleracea Bo7g098260 I 0.829
Bostr.13129s0160 Boechera stricta Bostr.13129s0160 I 0.855
Bostr.1460s0130 Boechera stricta Bostr.1460s0130 I 0.844
Bostr.26833s0140 Boechera stricta Bostr.26833s0140 I
Bra001032 Brassica rapa Bra001032 I 0.829
Bra005967 Brassica rapa Bra005967 I
Bra012990 Brassica rapa Bra012990 I 0.829
Bra029344 Brassica rapa Bra029344 I
Bra039158 Brassica rapa Bra039158 I 0.845
BRADI2G06890 Brachypodium distachyon BRADI2G06890 I 0.946
BRADI2G20060 Brachypodium distachyon BRADI2G20060 I 0.885
BRADI2G50687 Brachypodium distachyon BRADI2G50687 I 0.876
BRADI4G01547 Brachypodium distachyon BRADI4G01547 I 0.858
Cagra.0083s0006 Capsella grandiflora Cagra.0083s0006 I
Cagra.1365s0013 Capsella grandiflora Cagra.1365s0013 I
Cagra.3823s0015 Capsella grandiflora Cagra.3823s0015 I 0.851
Carubv10001730m.g Capsella rubella Carubv10001730m.g I
Carubv10014042m.g Capsella rubella Carubv10014042m.g I 0.828
Carubv10026656m.g Capsella rubella Carubv10026656m.g I
cassava2420.valid.m1 Manihot esculenta cassava2420.valid.m1 I 0.879
cassava29094.valid.m1 Manihot esculenta cassava29094.valid.m1 I 0.837
cassava30483.valid.m1 Manihot esculenta cassava30483.valid.m1 I 0.837
cassava32529.m1 Manihot esculenta cassava32529.m1 I 0.828
cassava46272.m1 Manihot esculenta cassava46272.m1 I 0.846
cassava7638.valid.m1 Manihot esculenta cassava7638.valid.m1 I 0.889
Ca_05033 Cicer arietinum Ca_05033 I 0.877
Ca_11295 Cicer arietinum Ca_11295 I 0.928
Ca_13216 Cicer arietinum Ca_13216 I 0.837
Ca_24196 Cicer arietinum Ca_24196 I
Ca_24948 Cicer arietinum Ca_24948 I 0.845
chr4.CM0500.330.nd Lotus japonicus chr4.CM0500.330.nd I 0.831
Ciclev10011887m.g Citrus clementina Ciclev10011887m.g I 0.824
Ciclev10014986m.g Citrus clementina Ciclev10014986m.g I 0.878
Ciclev10020626m.g Citrus clementina Ciclev10020626m.g I 0.826
Cla010936 Citrullus lanatus Cla010936 I
Cla018836 Citrullus lanatus Cla018836 I
Cla019340 Citrullus lanatus Cla019340 I
Cla019865 Citrullus lanatus Cla019865 I 0.866
Cla023702 Citrullus lanatus Cla023702 I 0.945
Cucsa.047860 Cucumis sativus Cucsa.047860 I 0.867
Cucsa.111880 Cucumis sativus Cucsa.111880 I 0.866
Cucsa.113300 Cucumis sativus Cucsa.113300 I 0.856
Cucsa.122730 Cucumis sativus Cucsa.122730 I 0.946
Cucsa.198300 Cucumis sativus Cucsa.198300 I
Cucsa.215290 Cucumis sativus Cucsa.215290 I 0.839
Eucgr.B00608 Eucalyptus grandis Eucgr.B00608 I
Eucgr.I02038 Eucalyptus grandis Eucgr.I02038 I 0.874
Eucgr.K02535 Eucalyptus grandis Eucgr.K02535 I
evm.TU.supercontig_14.188 Carica papaya evm.TU.supercontig_14.188 I 0.837
evm.TU.supercontig_94.62 Carica papaya evm.TU.supercontig_94.62 I 0.832
F775_18470 Aegilops tauschii F775_18470 I 0.876
PTF1 Arabidopsis lyrata fgenesh2_kg.3__146__AT3G02150.2 I 0.828
TCP17 Arabidopsis lyrata fgenesh2_kg.6__773__AT5G08070.1 I 0.831
TCP5 Arabidopsis lyrata fgenesh2_kg.8__2066__AT5G60970.1 D 0.828
gene04255-v1.0-hybrid Fragaria vesca gene04255-v1.0-hybrid I 0.837
gene26101-v1.0-hybrid Fragaria vesca gene26101-v1.0-hybrid I 0.832
GLYMA04G32324 Glycine max GLYMA04G32324 I 0.822
GLYMA05G00300 Glycine max GLYMA05G00300 I
GLYMA06G22240 Glycine max GLYMA06G22240 I
GLYMA08G10350 Glycine max GLYMA08G10350 I 0.892
GLYMA08G27155 Glycine max GLYMA08G27155 I 0.844
GLYMA12G14200 Glycine max GLYMA12G14200 I 0.940
GLYMA13G29160 Glycine max GLYMA13G29160 I 0.885
GLYMA15G09910 Glycine max GLYMA15G09910 I 0.885
GLYMA17G08761 Glycine max GLYMA17G08761 I
GLYMA18G50371 Glycine max GLYMA18G50371 I 0.844
GLYMA19G03786 Glycine max GLYMA19G03786 I
Gorai.001G076700 Gossypium raimondii Gorai.001G076700 I
Gorai.006G009800 Gossypium raimondii Gorai.006G009800 I 0.857
Gorai.008G199700 Gossypium raimondii Gorai.008G199700 I 0.847
Gorai.011G046000 Gossypium raimondii Gorai.011G046000 I 0.881
Gorai.012G048500 Gossypium raimondii Gorai.012G048500 I 0.836
GRMZM2G035944 Zea mays GRMZM2G035944 I 0.898
GRMZM2G120151 Zea mays GRMZM2G120151 I 0.891
GRMZM2G166946 Zea mays GRMZM2G166946 I 0.879
GRMZM2G180568 Zea mays GRMZM2G180568 I 0.877
GSMUA_Achr4G31520_001 Musa acuminata GSMUA_Achr4G31520_001 I 0.858
GSMUA_Achr4G32850_001 Musa acuminata GSMUA_Achr4G32850_001 I 0.874
GSMUA_Achr6G27420_001 Musa acuminata GSMUA_Achr6G27420_001 I
LjSGA_022391.1 Lotus japonicus LjSGA_022391.1 I 0.847
LjT20A21.20.nc Lotus japonicus LjT20A21.20.nc D 0.905
LPERR01G06830 Leersia perrieri LPERR01G06830 I 0.925
LPERR01G27380 Leersia perrieri LPERR01G27380 I 0.859
LPERR05G18480 Leersia perrieri LPERR05G18480 I 0.870
LPERR12G15920 Leersia perrieri LPERR12G15920 I 0.840
Lus10032984.g Linum usitatissimum Lus10032984.g I
Lus10034679.g Linum usitatissimum Lus10034679.g I 0.838
MDP0000120671 Malus domestica MDP0000120671 I
MDP0000130524 Malus domestica MDP0000130524 I 0.828
MDP0000155433 Malus domestica MDP0000155433 I 0.827
MDP0000199422 Malus domestica MDP0000199422 I 0.828
MDP0000202241 Malus domestica MDP0000202241 I
MDP0000253526 Malus domestica MDP0000253526 I 0.828
MDP0000287069 Malus domestica MDP0000287069 I 0.838
MDP0000320363 Malus domestica MDP0000320363 I 0.823
MDP0000373350 Malus domestica MDP0000373350 I 0.828
MDP0000388684 Malus domestica MDP0000388684 I
MDP0000534647 Malus domestica MDP0000534647 I
MDP0000594000 Malus domestica MDP0000594000 I
MDP0000617746 Malus domestica MDP0000617746 I 0.828
MDP0000692406 Malus domestica MDP0000692406 I 0.823
MDP0000927314 Malus domestica MDP0000927314 I 0.889
mgf006703m Mimulus guttatus mgf006703m I 0.849
mgf007729m Mimulus guttatus mgf007729m I 0.864
mgf008626m Mimulus guttatus mgf008626m I
MLOC_14785 Hordeum vulgare MLOC_14785 I 0.859
MLOC_70266 Hordeum vulgare MLOC_70266 I 0.854
MLOC_72581 Hordeum vulgare MLOC_72581 I 0.858
MTR_3g026050 Medicago truncatula MTR_3g026050 I
MTR_4g079580 Medicago truncatula MTR_4g079580 I 0.933
MTR_4g109660 Medicago truncatula MTR_4g109660 I 0.851
MTR_6g015350 Medicago truncatula MTR_6g015350 I 0.831
OBART01G07230 Oryza barthii OBART01G07230 I 0.933
OBART01G31910 Oryza barthii OBART01G31910 I 0.850
OGLUM01G08160 Oryza glumaepatula OGLUM01G08160 I 0.933
OGLUM01G36040 Oryza glumaepatula OGLUM01G36040 I 0.885
OGLUM05G23780 Oryza glumaepatula OGLUM05G23780 I 0.864
OGLUM12G20570 Oryza glumaepatula OGLUM12G20570 I 0.836
OMERI01G07200 Oryza meridionalis OMERI01G07200 I 0.948
OMERI01G28950 Oryza meridionalis OMERI01G28950 I 0.849
OMERI05G20240 Oryza meridionalis OMERI05G20240 I 0.853
OMERI12G13760 Oryza meridionalis OMERI12G13760 I 0.839
ONIVA01G09270 Oryza nivara ONIVA01G09270 I 0.934
ONIVA01G36230 Oryza nivara ONIVA01G36230 I 0.850
ONIVA05G23460 Oryza nivara ONIVA05G23460 I 0.864
ONIVA12G17870 Oryza nivara ONIVA12G17870 I 0.836
OPUNC01G06940 Oryza punctata OPUNC01G06940 I 0.933
OPUNC01G30950 Oryza punctata OPUNC01G30950 I 0.840
OPUNC05G20130 Oryza punctata OPUNC05G20130 I 0.852
OPUNC12G17090 Oryza punctata OPUNC12G17090 I 0.851
orange1.1g009938m.g Citrus sinensis orange1.1g009938m.g I 0.878
orange1.1g015799m.g Citrus sinensis orange1.1g015799m.g I 0.824
orange1.1g017725m.g Citrus sinensis orange1.1g017725m.g I 0.826
ORGLA01G0062300 Oryza glaberrima ORGLA01G0062300 I 0.933
ORGLA01G0259400 Oryza glaberrima ORGLA01G0259400 I 0.850
ORGLA05G0197200 Oryza glaberrima ORGLA05G0197200 I 0.864
ORGLA12G0161900 Oryza glaberrima ORGLA12G0161900 I 0.836
ORUFI01G07780 Oryza rufipogon ORUFI01G07780 I 0.933
ORUFI01G35100 Oryza rufipogon ORUFI01G35100 I 0.850
ORUFI05G23910 Oryza rufipogon ORUFI05G23910 I 0.867
OS01G0213800 Oryza sativa OS01G0213800 D 0.933
OS01G0763200 Oryza sativa OS01G0763200 I 0.850
OS05G0513100 Oryza sativa OS05G0513100 I 0.864
Pavir.Ca01337 Panicum virgatum Pavir.Ca01337 I 0.891
Pavir.Ca02949 Panicum virgatum Pavir.Ca02949 I 0.865
Pavir.Cb00038 Panicum virgatum Pavir.Cb00038 I 0.883
Pavir.Ea02793 Panicum virgatum Pavir.Ea02793 I 0.885
Pavir.J03475 Panicum virgatum Pavir.J03475 I 0.936
Pavir.J15913 Panicum virgatum Pavir.J15913 I 0.886
Pavir.J24681 Panicum virgatum Pavir.J24681 I 0.936
Pavir.J35609 Panicum virgatum Pavir.J35609 I 0.887
Pavir.J37910 Panicum virgatum Pavir.J37910 I 0.871
PDK_20s1781021g001 Phoenix dactylifera PDK_20s1781021g001 I 0.829
PDK_20s1781021g002 Phoenix dactylifera PDK_20s1781021g002 I 0.839
PGSC0003DMG400001362 Solanum tuberosum PGSC0003DMG400001362 I 0.829
PGSC0003DMG400004082 Solanum tuberosum PGSC0003DMG400004082 I 0.859
PGSC0003DMG400019904 Solanum tuberosum PGSC0003DMG400019904 I 0.858
PGSC0003DMG400024632 Solanum tuberosum PGSC0003DMG400024632 I 0.841
PGSC0003DMG400026568 Solanum tuberosum PGSC0003DMG400026568 I 0.841
PK10344.1 Cannabis sativa PK10344.1 D 0.873
PK16724.1 Cannabis sativa PK16724.1 I 0.857
PK17676.1 Cannabis sativa PK17676.1 I
Pm010440 Prunus mume Pm010440 I 0.879
Pm016049 Prunus mume Pm016049 I 0.834
Pm024946 Prunus mume Pm024946 I
POPTR_0004s06440 Populus trichocarpa POPTR_0004s06440 I 0.867
POPTR_0004s11510 Populus trichocarpa POPTR_0004s11510 I 0.838
POPTR_0011s02350 Populus trichocarpa POPTR_0011s02350 I 0.879
POPTR_0015s06980 Populus trichocarpa POPTR_0015s06980 I 0.831
POPTR_0017s13050 Populus trichocarpa POPTR_0017s13050 I 0.837
PRUPE_ppa004612mg Prunus persica PRUPE_ppa004612mg I 0.879
PRUPE_ppa007243mg Prunus persica PRUPE_ppa007243mg I 0.834
PRUPE_ppa014630mg Prunus persica PRUPE_ppa014630mg I
SapurV1A.0232s0150 Salix purpurea SapurV1A.0232s0150 I 0.879
SapurV1A.0323s0010 Salix purpurea SapurV1A.0323s0010 I 0.837
SapurV1A.0546s0080 Salix purpurea SapurV1A.0546s0080 I
SapurV1A.0795s0080 Salix purpurea SapurV1A.0795s0080 I 0.837
SapurV1A.0901s0090 Salix purpurea SapurV1A.0901s0090 I 0.837
SapurV1A.0971s0180 Salix purpurea SapurV1A.0971s0180 I 0.871
SapurV1A.1394s0060 Salix purpurea SapurV1A.1394s0060 I 0.871
SapurV1A.2245s0020 Salix purpurea SapurV1A.2245s0020 I
SapurV1A.4442s0010 Salix purpurea SapurV1A.4442s0010 I 0.837
SapurV1A.4443s0010 Salix purpurea SapurV1A.4443s0010 I 0.837
Sb03g001940 Sorghum bicolor Sb03g001940 I 0.938
Sb03g035350 Sorghum bicolor Sb03g035350 I 0.890
Sb08g021690 Sorghum bicolor Sb08g021690 I 0.908
Sb09g025340 Sorghum bicolor Sb09g025340 I 0.857
Si002496m.g Setaria italica Si002496m.g I 0.879
Si004564m.g Setaria italica Si004564m.g I 0.950
Si022811m.g Setaria italica Si022811m.g I 0.872
Si022833m.g Setaria italica Si022833m.g I 0.885
Solyc02g065800.1 Solanum lycopersicum Solyc02g065800.1 I 0.853
Solyc02g089020.1 Solanum lycopersicum Solyc02g089020.1 I 0.853
Solyc03g115010.1 Solanum lycopersicum Solyc03g115010.1 I
Solyc06g069460.1 Solanum lycopersicum Solyc06g069460.1 I 0.871
Solyc08g048370.2 Solanum lycopersicum Solyc08g048370.2 I 0.867
Solyc08g048390.1 Solanum lycopersicum Solyc08g048390.1 I 0.878
TCM_014288 Theobroma cacao TCM_014288 I
TCM_018809 Theobroma cacao TCM_018809 I 0.837
TCM_029442 Theobroma cacao TCM_029442 I 0.882
Thhalv10004440m.g Eutrema salsugineum Thhalv10004440m.g I
Thhalv10014467m.g Eutrema salsugineum Thhalv10014467m.g I 0.870
Thhalv10021021m.g Eutrema salsugineum Thhalv10021021m.g I 0.861
TRAES3BF002700090CFD_g Triticum aestivum TRAES3BF002700090CFD_g I 0.886
Traes_1AL_79B8C6F15 Triticum aestivum Traes_1AL_79B8C6F15 I 0.850
Traes_2AL_EA60A06AC Triticum aestivum Traes_2AL_EA60A06AC I 0.919
Traes_2BL_36A3AB3A2 Triticum aestivum Traes_2BL_36A3AB3A2 I 0.928
Traes_5BL_2DDBAA0C2 Triticum aestivum Traes_5BL_2DDBAA0C2 I 0.888
Traes_5BS_77558D2A3 Triticum aestivum Traes_5BS_77558D2A3 I 0.861
Traes_5DS_643EDFE5B Triticum aestivum Traes_5DS_643EDFE5B I 0.864
PTF1 Vitis vinifera VIT_14s0068g00330 I 0.824