Cagra.1365s0013 (Capsella grandiflora)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Cagra.1365s0013 T344730_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP17
M07290_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP17_col_a 		0.964 0.691
TCP17
M07291_2.00 		Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY		 Dap-seq
OMalley et al.(2016)
TCP17_colamp_a 		0.964 0.691
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.932 0.500
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.932 0.500
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.926 0.582
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.926 0.564
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.900 0.491
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.860 0.427
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.826 0.409
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1365s0013.1.p TCP 47 212

Links

Other TCP family TFs
Other Capsella grandiflora TFs

299 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29738.m001046 Ricinus communis 29738.m001046 I 0.000
29912.m005354 Ricinus communis 29912.m005354 I 0.000
29917.m002016 Ricinus communis 29917.m002016 I 0.000
29983.m003125 Ricinus communis 29983.m003125 I 0.000
AMTR_s00021p00209320 Amborella trichopoda AMTR_s00021p00209320 I 0.000
AMTR_s00049p00217400 Amborella trichopoda AMTR_s00049p00217400 I 0.000
Aquca_036_00051 Aquilegia coerulea Aquca_036_00051 I 0.000
Aquca_054_00006 Aquilegia coerulea Aquca_054_00006 I 0.000
anac075 Arabidopsis thaliana AT4G29230 D 0.000
BGIOSGA002220 Oryza indica BGIOSGA002220 I 0.000
BGIOSGA006133 Oryza indica BGIOSGA006133 N 0.000
BGIOSGA014881 Oryza indica BGIOSGA014881 N 0.000
BGIOSGA022664 Oryza indica BGIOSGA022664 I 0.000
Bo1g016630 Brassica oleracea Bo1g016630 I 0.000
Bo7g113660 Brassica oleracea Bo7g113660 I 0.000
Bostr.7867s0767 Boechera stricta Bostr.7867s0767 I 0.000
Bra011090 Brassica rapa Bra011090 I 0.000
Bra024152 Brassica rapa Bra024152 I 0.000
BRADI1G43840 Brachypodium distachyon BRADI1G43840 I 0.000
BRADI2G05700 Brachypodium distachyon BRADI2G05700 I 0.000
BRADI3G47627 Brachypodium distachyon BRADI3G47627 I 0.000
BRADI5G13450 Brachypodium distachyon BRADI5G13450 N 0.000
Cagra.0495s0057 Capsella grandiflora Cagra.0495s0057 I 0.000
Carubv10004602m.g Capsella rubella Carubv10004602m.g I 0.000
cassava11584.m1 Manihot esculenta cassava11584.m1 I 0.000
cassava12330.valid.m1 Manihot esculenta cassava12330.valid.m1 I 0.000
cassava14633.m1 Manihot esculenta cassava14633.m1 I 0.000
cassava17166.m1 Manihot esculenta cassava17166.m1 I 0.000
cassava3690.m1 Manihot esculenta cassava3690.m1 I 0.000
cassava44586.m1 Manihot esculenta cassava44586.m1 I 0.000
cassava46566.m1 Manihot esculenta cassava46566.m1 I 0.000
chr2.CM0749.410.nc Lotus japonicus chr2.CM0749.410.nc I 0.000
Ciclev10015507m.g Citrus clementina Ciclev10015507m.g I 0.000
Ciclev10017822m.g Citrus clementina Ciclev10017822m.g I 0.000
Cla011431 Citrullus lanatus Cla011431 I 0.000
Cla020673 Citrullus lanatus Cla020673 I 0.000
Cucsa.283900 Cucumis sativus Cucsa.283900 I 0.000
Cucsa.288680 Cucumis sativus Cucsa.288680 I 0.000
Eucgr.C00958 Eucalyptus grandis Eucgr.C00958 I 0.000
Eucgr.G02349 Eucalyptus grandis Eucgr.G02349 I 0.000
Eucgr.J02254 Eucalyptus grandis Eucgr.J02254 I 0.000
Eucgr.K01061 Eucalyptus grandis Eucgr.K01061 I 0.000
evm.TU.supercontig_78.40 Carica papaya evm.TU.supercontig_78.40 I 0.000
evm.TU.supercontig_83.99 Carica papaya evm.TU.supercontig_83.99 I 0.000
F775_00415 Aegilops tauschii F775_00415 N 0.000
F775_07141 Aegilops tauschii F775_07141 I 0.000
F775_07518 Aegilops tauschii F775_07518 I 0.000
F775_14938 Aegilops tauschii F775_14938 N 0.000
F775_16052 Aegilops tauschii F775_16052 I 0.000
F775_30638 Aegilops tauschii F775_30638 I 0.000
anac075 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7001013 I 0.000
gene03875-v1.0-hybrid Fragaria vesca gene03875-v1.0-hybrid I 0.000
gene11344-v1.0-hybrid Fragaria vesca gene11344-v1.0-hybrid I 0.000
GLYMA01G00880 Glycine max GLYMA01G00880 I 0.000
GLYMA01G22510 Glycine max GLYMA01G22510 I 0.000
GLYMA02G11140 Glycine max GLYMA02G11140 I 0.000
GLYMA05G36031 Glycine max GLYMA05G36031 I 0.000
GLYMA08G03590 Glycine max GLYMA08G03590 I 0.000
GLYMA16G07501 Glycine max GLYMA16G07501 N 0.000
GLYMA19G00640 Glycine max GLYMA19G00640 N 0.000
GLYMA19G08510 Glycine max GLYMA19G08510 N 0.000
GLYMA20G32690 Glycine max GLYMA20G32690 I 0.000
Gorai.006G034600 Gossypium raimondii Gorai.006G034600 I 0.000
Gorai.007G075300 Gossypium raimondii Gorai.007G075300 I 0.000
Gorai.008G155200 Gossypium raimondii Gorai.008G155200 I 0.000
Gorai.008G186300 Gossypium raimondii Gorai.008G186300 I 0.000
Gorai.009G028900 Gossypium raimondii Gorai.009G028900 I 0.000
Gorai.010G078900 Gossypium raimondii Gorai.010G078900 I 0.000
GRMZM2G027309 Zea mays GRMZM2G027309 I 0.000
GRMZM2G038073 Zea mays GRMZM2G038073 N 0.000
GRMZM2G078954 Zea mays GRMZM2G078954 I 0.000
GRMZM2G086768 Zea mays GRMZM2G086768 I 0.000
GRMZM2G104078 Zea mays GRMZM2G104078 N 0.000
GRMZM2G112681 Zea mays GRMZM2G112681 I 0.000
GRMZM2G166721 Zea mays GRMZM2G166721 I 0.000
GRMZM2G379608 Zea mays GRMZM2G379608 I 0.000
GRMZM2G450445 Zea mays GRMZM2G450445 N 0.000
GSMUA_Achr2G16590_001 Musa acuminata GSMUA_Achr2G16590_001 I 0.000
GSMUA_Achr3G07330_001 Musa acuminata GSMUA_Achr3G07330_001 I 0.000
GSMUA_Achr4G02730_001 Musa acuminata GSMUA_Achr4G02730_001 I 0.000
GSMUA_Achr4G30940_001 Musa acuminata GSMUA_Achr4G30940_001 I 0.000
GSMUA_Achr6G05480_001 Musa acuminata GSMUA_Achr6G05480_001 I 0.000
GSMUA_Achr7G09510_001 Musa acuminata GSMUA_Achr7G09510_001 I 0.000
GSMUA_Achr9G01880_001 Musa acuminata GSMUA_Achr9G01880_001 I 0.000
GSMUA_AchrUn_randomG17050_001 Musa acuminata GSMUA_AchrUn_randomG17050_001 I 0.000
GSMUA_AchrUn_randomG28610_001 Musa acuminata GSMUA_AchrUn_randomG28610_001 I 0.000
LPERR01G05530 Leersia perrieri LPERR01G05530 I 0.000
LPERR02G18380 Leersia perrieri LPERR02G18380 N 0.000
LPERR04G12800 Leersia perrieri LPERR04G12800 N 0.000
LPERR05G05170 Leersia perrieri LPERR05G05170 I 0.000
MDP0000124509 Malus domestica MDP0000124509 I 0.000
mgf012882m Mimulus guttatus mgf012882m I 0.000
mgf018486m Mimulus guttatus mgf018486m I 0.000
MLOC_75795 Hordeum vulgare MLOC_75795 I 0.000
OB01G15780 Oryza brachyantha OB01G15780 I 0.000
OB02G30060 Oryza brachyantha OB02G30060 N 0.000
OB06G19430 Oryza brachyantha OB06G19430 I 0.000
OBART01G05840 Oryza barthii OBART01G05840 I 0.000
OBART02G22660 Oryza barthii OBART02G22660 N 0.000
OBART04G16110 Oryza barthii OBART04G16110 N 0.000
OBART06G10240 Oryza barthii OBART06G10240 I 0.000
OGLUM01G06390 Oryza glumaepatula OGLUM01G06390 I 0.000
OGLUM02G22980 Oryza glumaepatula OGLUM02G22980 N 0.000
OGLUM04G16020 Oryza glumaepatula OGLUM04G16020 N 0.000
OGLUM06G11140 Oryza glumaepatula OGLUM06G11140 I 0.000
OLONG_005904 Oryza longistaminata OLONG_005904 N 0.000
OLONG_008708 Oryza longistaminata OLONG_008708 I 0.000
OLONG_014922 Oryza longistaminata OLONG_014922 I 0.000
OLONG_017685 Oryza longistaminata OLONG_017685 I 0.000
OLONG_021848 Oryza longistaminata OLONG_021848 N 0.000
OMERI01G02010 Oryza meridionalis OMERI01G02010 N 0.000
OMERI01G23720 Oryza meridionalis OMERI01G23720 I 0.000
OMERI02G22200 Oryza meridionalis OMERI02G22200 N 0.000
OMERI06G11940 Oryza meridionalis OMERI06G11940 I 0.000
ONIVA01G06690 Oryza nivara ONIVA01G06690 I 0.000
ONIVA02G25300 Oryza nivara ONIVA02G25300 N 0.000
ONIVA04G14230 Oryza nivara ONIVA04G14230 N 0.000
ONIVA06G11950 Oryza nivara ONIVA06G11950 I 0.000
OPUNC01G05680 Oryza punctata OPUNC01G05680 I 0.000
OPUNC02G20570 Oryza punctata OPUNC02G20570 N 0.000
OPUNC04G13980 Oryza punctata OPUNC04G13980 N 0.000
OPUNC06G09830 Oryza punctata OPUNC06G09830 I 0.000
orange1.1g021635m.g Citrus sinensis orange1.1g021635m.g I 0.000
ORGLA01G0055000 Oryza glaberrima ORGLA01G0055000 I 0.000
ORGLA01G0213300 Oryza glaberrima ORGLA01G0213300 I 0.000
ORGLA02G0193300 Oryza glaberrima ORGLA02G0193300 N 0.000
ORGLA06G0096700 Oryza glaberrima ORGLA06G0096700 I 0.000
ORUFI01G06380 Oryza rufipogon ORUFI01G06380 I 0.000
ORUFI02G23890 Oryza rufipogon ORUFI02G23890 N 0.000
ORUFI04G17470 Oryza rufipogon ORUFI04G17470 N 0.000
ORUFI06G10770 Oryza rufipogon ORUFI06G10770 I 0.000
OS01G0191300 Oryza sativa OS01G0191300 I 0.000
OS02G0594800 Oryza sativa OS02G0594800 N 0.000
Pavir.Aa00442 Panicum virgatum Pavir.Aa00442 I 0.000
Pavir.Aa01341 Panicum virgatum Pavir.Aa01341 I 0.000
Pavir.Ab02181 Panicum virgatum Pavir.Ab02181 I 0.000
Pavir.Da01643 Panicum virgatum Pavir.Da01643 I 0.000
Pavir.Db01100 Panicum virgatum Pavir.Db01100 I 0.000
Pavir.Eb00261 Panicum virgatum Pavir.Eb00261 I 0.000
Pavir.Gb01338 Panicum virgatum Pavir.Gb01338 I 0.000
Pavir.J05241 Panicum virgatum Pavir.J05241 I 0.000
Pavir.J13205 Panicum virgatum Pavir.J13205 I 0.000
PDK_20s1381351g001 Phoenix dactylifera PDK_20s1381351g001 I 0.000
PGSC0003DMG400000809 Solanum tuberosum PGSC0003DMG400000809 I 0.000
PGSC0003DMG400012607 Solanum tuberosum PGSC0003DMG400012607 I 0.000
PGSC0003DMG400016896 Solanum tuberosum PGSC0003DMG400016896 I 0.000
PK17141.1 Cannabis sativa PK17141.1 I 0.000
PK25812.1 Cannabis sativa PK25812.1 I 0.000
PK27085.1 Cannabis sativa PK27085.1 D 0.000
PK28347.1 Cannabis sativa PK28347.1 I 0.000
Pm015625 Prunus mume Pm015625 I 0.000
Pm027280 Prunus mume Pm027280 I 0.000
Pm029010 Prunus mume Pm029010 I 0.000
POPTR_0001s35490 Populus trichocarpa POPTR_0001s35490 I 0.000
POPTR_0006s15740 Populus trichocarpa POPTR_0006s15740 I 0.000
POPTR_0007s01350 Populus trichocarpa POPTR_0007s01350 I 0.000
POPTR_0008s11550 Populus trichocarpa POPTR_0008s11550 I 0.000
POPTR_0010s13980 Populus trichocarpa POPTR_0010s13980 I 0.000
POPTR_0017s04800 Populus trichocarpa POPTR_0017s04800 I 0.000
POPTR_0018s06790 Populus trichocarpa POPTR_0018s06790 I 0.000
PRUPE_ppa004775mg Prunus persica PRUPE_ppa004775mg I 0.000
PRUPE_ppa005648mg Prunus persica PRUPE_ppa005648mg I 0.000
PRUPE_ppa006948mg Prunus persica PRUPE_ppa006948mg I 0.000
SapurV1A.0079s0500 Salix purpurea SapurV1A.0079s0500 I 0.000
SapurV1A.0212s0190 Salix purpurea SapurV1A.0212s0190 I 0.000
SapurV1A.0304s0050 Salix purpurea SapurV1A.0304s0050 I 0.000
SapurV1A.0716s0010 Salix purpurea SapurV1A.0716s0010 I 0.000
SapurV1A.1259s0030 Salix purpurea SapurV1A.1259s0030 I 0.000
SapurV1A.1388s0020 Salix purpurea SapurV1A.1388s0020 I 0.000
SapurV1A.1828s0030 Salix purpurea SapurV1A.1828s0030 I 0.000
SapurV1A.2554s0030 Salix purpurea SapurV1A.2554s0030 I 0.000
SapurV1A.2846s0020 Salix purpurea SapurV1A.2846s0020 I 0.000
SapurV1A.3101s0030 Salix purpurea SapurV1A.3101s0030 I 0.000
Sb03g003170 Sorghum bicolor Sb03g003170 I 0.000
Sb03g030750 Sorghum bicolor Sb03g030750 I 0.000
Sb04g024780 Sorghum bicolor Sb04g024780 N 0.000
Sb06g020103 Sorghum bicolor Sb06g020103 I 0.000
Sb10g009670 Sorghum bicolor Sb10g009670 I 0.000
Si001527m.g Setaria italica Si001527m.g I 0.000
Si002301m.g Setaria italica Si002301m.g I 0.000
Si006639m.g Setaria italica Si006639m.g I 0.000
Si010735m.g Setaria italica Si010735m.g I 0.000
Si012740m.g Setaria italica Si012740m.g N 0.000
Si017393m.g Setaria italica Si017393m.g I 0.000
Si019444m.g Setaria italica Si019444m.g I 0.000
Solyc02g093420.2 Solanum lycopersicum Solyc02g093420.2 I 0.000
Solyc05g009840.2 Solanum lycopersicum Solyc05g009840.2 I 0.000
Solyc05g026180.1 Solanum lycopersicum Solyc05g026180.1 I 0.000
TCM_008229 Theobroma cacao TCM_008229 I 0.000
TCM_011869 Theobroma cacao TCM_011869 I 0.000
TCM_016984 Theobroma cacao TCM_016984 I 0.000
TCM_037747 Theobroma cacao TCM_037747 I 0.000
Thhalv10024980m.g Eutrema salsugineum Thhalv10024980m.g I 0.000
TRAES3BF097400030CFD_g Triticum aestivum TRAES3BF097400030CFD_g I 0.000
Traes_2DL_3757D78B3 Triticum aestivum Traes_2DL_3757D78B3 N 0.000
Traes_2DL_AE270CBAA Triticum aestivum Traes_2DL_AE270CBAA N 0.000
Traes_2DL_AE270CBAA1 Triticum aestivum Traes_2DL_AE270CBAA1 N 0.000
Traes_6AL_C14335DC8 Triticum aestivum Traes_6AL_C14335DC8 I 0.000
Traes_6BL_B27806C89 Triticum aestivum Traes_6BL_B27806C89 I 0.000
Traes_6DL_2F3586557 Triticum aestivum Traes_6DL_2F3586557 I 0.000
Traes_7AS_6E6A5CD04 Triticum aestivum Traes_7AS_6E6A5CD04 I 0.000
Traes_7BS_99BF8BA2F Triticum aestivum Traes_7BS_99BF8BA2F I 0.000
Traes_7DS_78B5508C0 Triticum aestivum Traes_7DS_78B5508C0 I 0.000
TRIUR3_21992 Triticum urartu TRIUR3_21992 I 0.000
TRIUR3_27393 Triticum urartu TRIUR3_27393 I 0.000
TRIUR3_31341 Triticum urartu TRIUR3_31341 I 0.000
SOG1 Vitis vinifera VIT_01s0011g02990 I 0.000
VIT_11s0016g02880 Vitis vinifera VIT_11s0016g02880 I 0.000
ANAC073 Vitis vinifera VIT_12s0028g03050 I 0.000
VIT_14s0066g00360 Vitis vinifera VIT_14s0066g00360 I 0.000