Cagra.4440s0003 (Capsella grandiflora)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Cagra.4440s0003 T344746_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP16
M00893_2.00 		Arabidopsis thaliana
NNGGNCCRB
VYGGNCCNN		 PBM
Franco-Zorrilla et al.(2014)
TCP16 		0.878 0.505
TCP16
M07287_2.00 		Arabidopsis thaliana
RTKGGGYCCAC
GTGGRCCCMAY		 Dap-seq
OMalley et al.(2016)
TCP16_col_a 		0.878 0.505
TCP16
M07288_2.00 		Arabidopsis thaliana
NRGGHCCACHN
NDGTGGDCCYN		 Dap-seq
OMalley et al.(2016)
TCP16_colamp_a 		0.878 0.505
TCP16
M02721_2.00 		Arabidopsis thaliana
BBGGGHCCAC
GTGGDCCCVV		 SELEX
Mathelier et al.(2014)
MA0587.1 		0.878 0.505
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.4440s0003.1.p TCP 15 168

Links

Other TCP family TFs
Other Capsella grandiflora TFs

6 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29900.m001610 Ricinus communis 29900.m001610 I
Aquca_081_00012 Aquilegia coerulea Aquca_081_00012 I
BHLH106 Arabidopsis thaliana AT2G41130 N
BGIOSGA003013 Oryza indica BGIOSGA003013 I
Bo3g035410 Brassica oleracea Bo3g035410 N
Bo4g012960 Brassica oleracea Bo4g012960 N
Bo4g112750 Brassica oleracea Bo4g112750 N
Bo4g190700 Brassica oleracea Bo4g190700 N
Bostr.9345s0019 Boechera stricta Bostr.9345s0019 N
Bra004599 Brassica rapa Bra004599 N
Bra014672 Brassica rapa Bra014672 N
Bra016951 Brassica rapa Bra016951 N
BRADI2G03830 Brachypodium distachyon BRADI2G03830 I
BRADI2G07050 Brachypodium distachyon BRADI2G07050 N
Cagra.0578s0007 Capsella grandiflora Cagra.0578s0007 N
Cagra.1642s0077 Capsella grandiflora Cagra.1642s0077 N
Carubv10017947m.g Capsella rubella Carubv10017947m.g N
Carubv10023903m.g Capsella rubella Carubv10023903m.g N
cassava18812.valid.m1 Manihot esculenta cassava18812.valid.m1 I
cassava32077.m1 Manihot esculenta cassava32077.m1 I
Ca_06386 Cicer arietinum Ca_06386 I
Ciclev10016289m.g Citrus clementina Ciclev10016289m.g I
Cla019977 Citrullus lanatus Cla019977 I
Cucsa.213230 Cucumis sativus Cucsa.213230 I
Eucgr.D00509 Eucalyptus grandis Eucgr.D00509 I
Eucgr.E02743 Eucalyptus grandis Eucgr.E02743 I
evm.TU.supercontig_7.53 Carica papaya evm.TU.supercontig_7.53 I
gene29828-v1.0-hybrid Fragaria vesca gene29828-v1.0-hybrid I
GLYMA02G15780 Glycine max GLYMA02G15780 I
GLYMA07G32690 Glycine max GLYMA07G32690 I
Gorai.009G163400 Gossypium raimondii Gorai.009G163400 I
Gorai.011G034000 Gossypium raimondii Gorai.011G034000 I
GRMZM2G016039 Zea mays GRMZM2G016039 I
GRMZM2G088443 Zea mays GRMZM2G088443 I
GRMZM2G166642 Zea mays GRMZM2G166642 I
GSMUA_Achr3G03510_001 Musa acuminata GSMUA_Achr3G03510_001 N
LPERR01G03590 Leersia perrieri LPERR01G03590 I
Lus10001885.g Linum usitatissimum Lus10001885.g I
Lus10013917.g Linum usitatissimum Lus10013917.g I
MDP0000256492 Malus domestica MDP0000256492 N
MLOC_64390 Hordeum vulgare MLOC_64390 I
MTR_4g087920 Medicago truncatula MTR_4g087920 I
OB01G17480 Oryza brachyantha OB01G17480 I
OGLUM01G08450 Oryza glumaepatula OGLUM01G08450 I
OMERI01G07330 Oryza meridionalis OMERI01G07330 I
ONIVA01G09540 Oryza nivara ONIVA01G09540 I
OPUNC01G07130 Oryza punctata OPUNC01G07130 I
orange1.1g024670m.g Citrus sinensis orange1.1g024670m.g I
ORGLA01G0065100 Oryza glaberrima ORGLA01G0065100 I
ORUFI01G08040 Oryza rufipogon ORUFI01G08040 I
OS01G0218100 Oryza sativa OS01G0218100 I
Pavir.Ca01107 Panicum virgatum Pavir.Ca01107 I
Pavir.Ea00157 Panicum virgatum Pavir.Ea00157 I
Pavir.Ea00439 Panicum virgatum Pavir.Ea00439 I
Pavir.Eb00095 Panicum virgatum Pavir.Eb00095 I
PK20225.1 Cannabis sativa PK20225.1 D
PRUPE_ppa021837mg Prunus persica PRUPE_ppa021837mg N
SapurV1A.0029s0640 Salix purpurea SapurV1A.0029s0640 N
SapurV1A.0189s0140 Salix purpurea SapurV1A.0189s0140 N
SapurV1A.1185s0010 Salix purpurea SapurV1A.1185s0010 I
SapurV1A.1821s0030 Salix purpurea SapurV1A.1821s0030 I
Sb03g001730 Sorghum bicolor Sb03g001730 I
Si002517m.g Setaria italica Si002517m.g I
Si002655m.g Setaria italica Si002655m.g I
TCM_029711 Theobroma cacao TCM_029711 I
Thhalv10006410m.g Eutrema salsugineum Thhalv10006410m.g N
Thhalv10017546m.g Eutrema salsugineum Thhalv10017546m.g N
TRAES3BF011300020CFD_g Triticum aestivum TRAES3BF011300020CFD_g I
Traes_5BL_CBFAD4B59 Triticum aestivum Traes_5BL_CBFAD4B59 N
VIT_14s0068g01580 Vitis vinifera VIT_14s0068g01580 I