Pavir.Da02366 (Panicum virgatum)
WRC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF08879 (WRC) IPR014977 Pavir.Da02366 T351723_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AtGRF6
M02545_2.00 		Arabidopsis thaliana
NNNNYDNN
NNHRNNNN		 PBM
Weirauch et al.(2014)
pTH7356 		0.791 0.791
AtGRF6
M07369_2.00 		Arabidopsis thaliana
NNNNNHNTGTCAGA
TCTGACANDNNNNN		 Dap-seq
OMalley et al.(2016)
AtGRF6_col_a 		0.791 0.791
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Da02366.1.p WRC 187 229
Pavir.Da02366.2.p WRC 172 214
Pavir.Da02366.3.p WRC 172 214

Links

Other WRC family TFs
Other Panicum virgatum TFs

594 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_045_00093 Aquilegia coerulea Aquca_045_00093 N
BGIOSGA002351 Oryza indica BGIOSGA002351 N
Bo9g177030 Brassica oleracea Bo9g177030 N
Bra009123 Brassica rapa Bra009123 N
Ca_13412 Cicer arietinum Ca_13412 N
Cucsa.136670 Cucumis sativus Cucsa.136670 N
Eucgr.J00206 Eucalyptus grandis Eucgr.J00206 N
evm.TU.supercontig_19.173 Carica papaya evm.TU.supercontig_19.173 N
GLYMA18G03080 Glycine max GLYMA18G03080 N
Gorai.010G197800 Gossypium raimondii Gorai.010G197800 N
GRMZM2G139369 Zea mays GRMZM2G139369 N
GSMUA_Achr2G18970_001 Musa acuminata GSMUA_Achr2G18970_001 N
LPERR01G03530 Leersia perrieri LPERR01G03530 N
MLOC_4879 Hordeum vulgare MLOC_4879 N
OB01G13760 Oryza brachyantha OB01G13760 N
OBART01G03880 Oryza barthii OBART01G03880 N
OGLUM01G04180 Oryza glumaepatula OGLUM01G04180 N
OLONG_021562 Oryza longistaminata OLONG_021562 N
OMERI01G03770 Oryza meridionalis OMERI01G03770 N
ONIVA01G04320 Oryza nivara ONIVA01G04320 N
OPUNC01G03540 Oryza punctata OPUNC01G03540 N
ORGLA01G0034200 Oryza glaberrima ORGLA01G0034200 N
ORUFI01G03990 Oryza rufipogon ORUFI01G03990 N
OS01G0158900 Oryza sativa OS01G0158900 N
Pavir.J07154 Panicum virgatum Pavir.J07154 N
POPTR_0010s19600 Populus trichocarpa POPTR_0010s19600 N
SapurV1A.0061s0270 Salix purpurea SapurV1A.0061s0270 N
Si000223m.g Setaria italica Si000223m.g N
Solyc06g051570.2 Solanum lycopersicum Solyc06g051570.2 N
TCM_042496 Theobroma cacao TCM_042496 N
Traes_3AS_496047B73 Triticum aestivum Traes_3AS_496047B73 N
ATNFXL2 Vitis vinifera VIT_13s0067g00920 N