Pavir.Cb01173 (Panicum virgatum)
WRKY

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03106 (WRKY) IPR003657 Pavir.Cb01173 T356710_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WRKY46
M07395_2.00 		Arabidopsis thaliana
VAAAGTCAAMG
CKTTGACTTTB		 Dap-seq
OMalley et al.(2016)
WRKY46_col_a 		0.830 0.610
WRKY46
M07396_2.00 		Arabidopsis thaliana
HRAAGTCAACG
CGTTGACTTYD		 Dap-seq
OMalley et al.(2016)
WRKY46_colamp_a 		0.830 0.610
WRKY70
M07399_2.00 		Arabidopsis thaliana
HAAAGTCAACGNN
NNCGTTGACTTTD		 Dap-seq
OMalley et al.(2016)
WRKY70_col 		0.823 0.610
WRKY55
M07392_2.00 		Arabidopsis thaliana
HWAGTCAACGNH
DNCGTTGACTWD		 Dap-seq
OMalley et al.(2016)
WRKY55_col_a 		0.814 0.627
For this family, TFs with SR scores > 0.808 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Cb01173.1.p WRKY 113 173

Links

Other WRKY family TFs
Other Panicum virgatum TFs

287 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30054.m000786 Ricinus communis 30054.m000786 I
AMTR_s00149p00035260 Amborella trichopoda AMTR_s00149p00035260 I
Aquca_044_00072 Aquilegia coerulea Aquca_044_00072 I
APRR2 Arabidopsis thaliana AT4G18020 D
Bo1g019180 Brassica oleracea Bo1g019180 I
Bo7g105690 Brassica oleracea Bo7g105690 I
Bostr.30275s0270 Boechera stricta Bostr.30275s0270 I
Bra012623 Brassica rapa Bra012623 I
Bra013277 Brassica rapa Bra013277 I
Bra013278 Brassica rapa Bra013278 I
Bra013279 Brassica rapa Bra013279 I
Bra036015 Brassica rapa Bra036015 I
Cagra.1595s0002 Capsella grandiflora Cagra.1595s0002 I
Carubv10004540m.g Capsella rubella Carubv10004540m.g I
cassava2466.valid.m1 Manihot esculenta cassava2466.valid.m1 I
cassava42048.valid.m1 Manihot esculenta cassava42048.valid.m1 I
Ca_02285 Cicer arietinum Ca_02285 I
Ca_12825 Cicer arietinum Ca_12825 I
Ca_24009 Cicer arietinum Ca_24009 I
chr2.CM0021.770.nc Lotus japonicus chr2.CM0021.770.nc I
chr4.CM0831.100.nd Lotus japonicus chr4.CM0831.100.nd I
Ciclev10031120m.g Citrus clementina Ciclev10031120m.g I
Cla008926 Citrullus lanatus Cla008926 I
Cla016403 Citrullus lanatus Cla016403 I
Cucsa.313480 Cucumis sativus Cucsa.313480 I
Cucsa.321580 Cucumis sativus Cucsa.321580 I
Eucgr.E00308 Eucalyptus grandis Eucgr.E00308 I
evm.TU.supercontig_6.428 Carica papaya evm.TU.supercontig_6.428 I
APRR2 Arabidopsis lyrata fgenesh2_kg.7__2503__AT4G18020.2 I
gene10484-v1.0-hybrid Fragaria vesca gene10484-v1.0-hybrid I
GLYMA01G40900 Glycine max GLYMA01G40900 I
GLYMA05G06070 Glycine max GLYMA05G06070 I
GLYMA11G04441 Glycine max GLYMA11G04441 I
GLYMA17G16360 Glycine max GLYMA17G16360 I
Gorai.003G180100 Gossypium raimondii Gorai.003G180100 I
Gorai.004G188300 Gossypium raimondii Gorai.004G188300 I
Gorai.008G228800 Gossypium raimondii Gorai.008G228800 I
GSMUA_Achr11G17740_001 Musa acuminata GSMUA_Achr11G17740_001 I
GSMUA_Achr2G15250_001 Musa acuminata GSMUA_Achr2G15250_001 I
GSMUA_Achr2G18200_001 Musa acuminata GSMUA_Achr2G18200_001 I
Lus10003013.g Linum usitatissimum Lus10003013.g I
Lus10011044.g Linum usitatissimum Lus10011044.g I
Lus10040109.g Linum usitatissimum Lus10040109.g I
MDP0000237396 Malus domestica MDP0000237396 I
MDP0000248863 Malus domestica MDP0000248863 I
MTR_4g098870 Medicago truncatula MTR_4g098870 I
MTR_5g014040 Medicago truncatula MTR_5g014040 I
orange1.1g008254m.g Citrus sinensis orange1.1g008254m.g I
PDK_20s1585631g001 Phoenix dactylifera PDK_20s1585631g001 I
PGSC0003DMG400024217 Solanum tuberosum PGSC0003DMG400024217 I
PGSC0003DMG400026587 Solanum tuberosum PGSC0003DMG400026587 I
PK19826.1 Cannabis sativa PK19826.1 I
Pm014733 Prunus mume Pm014733 I
POPTR_0001s02910 Populus trichocarpa POPTR_0001s02910 I
POPTR_0003s08600 Populus trichocarpa POPTR_0003s08600 I
PRUPE_ppa004161mg Prunus persica PRUPE_ppa004161mg I
SapurV1A.0132s0010 Salix purpurea SapurV1A.0132s0010 I
SapurV1A.1296s0050 Salix purpurea SapurV1A.1296s0050 I
SELMODRAFT_428906 Selaginella moellendorffii SELMODRAFT_428906 I
Solyc06g061030.2 Solanum lycopersicum Solyc06g061030.2 I
Solyc08g077230.2 Solanum lycopersicum Solyc08g077230.2 I
TCM_015780 Theobroma cacao TCM_015780 I
Thhalv10024919m.g Eutrema salsugineum Thhalv10024919m.g I
APRR2 Vitis vinifera VIT_02s0012g00570 I