Bra003924 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra003924 T001005_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF021
M06593_2.00 		Arabidopsis thaliana
HNYCDYCDYCDYCRCCGHCD
HGDCGGYGRHGRHGRHGRND		 Dap-seq
OMalley et al.(2016)
AT1G71450_col_a 		0.798 0.960
ERF021
M06594_2.00 		Arabidopsis thaliana
NHNNCRCCGHCDH
DHGDCGGYGNNDN		 Dap-seq
OMalley et al.(2016)
AT1G71450_colamp_a 		0.798 0.960
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra003924.1-P AP2 22 73

Links

Other AP2 family TFs
Other Brassica rapa TFs

63 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ERF021 Arabidopsis thaliana AT1G71450 D 0.798
gene27021-v1.0-hybrid Fragaria vesca gene27021-v1.0-hybrid I 0.733
cassava8552.m1 Manihot esculenta cassava8552.m1 I 0.754
gene27017-v1.0-hybrid Fragaria vesca gene27017-v1.0-hybrid I 0.680
evm.TU.supercontig_21.70 Carica papaya evm.TU.supercontig_21.70 I 0.711
evm.TU.supercontig_21.69 Carica papaya evm.TU.supercontig_21.69 I 0.738
Eucgr.F02975 Eucalyptus grandis Eucgr.F02975 I 0.719
Eucgr.F02974 Eucalyptus grandis Eucgr.F02974 I 0.748
Ciclev10024063m.g Citrus clementina Ciclev10024063m.g I 0.697
Ciclev10023857m.g Citrus clementina Ciclev10023857m.g I 0.753
Carubv10022349m.g Capsella rubella Carubv10022349m.g I 0.798
Carubv10012215m.g Capsella rubella Carubv10012215m.g I 0.705
Cagra.2418s0001 Capsella grandiflora Cagra.2418s0001 I 0.798
Bostr.3359s0006 Boechera stricta Bostr.3359s0006 I 0.680
Bostr.10273s0203 Boechera stricta Bostr.10273s0203 I 0.754
Cucsa.237150 Cucumis sativus Cucsa.237150 I 0.752
chr2.CM0018.610.nd Lotus japonicus chr2.CM0018.610.nd I 0.719
Gorai.005G116500 Gossypium raimondii Gorai.005G116500 I 0.714
Gorai.009G266600 Gossypium raimondii Gorai.009G266600 I 0.736
Gorai.009G266700 Gossypium raimondii Gorai.009G266700 I 0.706
Lus10006173.g Linum usitatissimum Lus10006173.g I 0.712
Lus10041050.g Linum usitatissimum Lus10041050.g I 0.713
MDP0000283350 Malus domestica MDP0000283350 I 0.748
orange1.1g035756m.g Citrus sinensis orange1.1g035756m.g I 0.753
orange1.1g046901m.g Citrus sinensis orange1.1g046901m.g I 0.697
SapurV1A.0551s0030 Salix purpurea SapurV1A.0551s0030 I 0.739
SapurV1A.1130s0100 Salix purpurea SapurV1A.1130s0100 I 0.747
SapurV1A.1331s0040 Salix purpurea SapurV1A.1331s0040 I 0.747
Thhalv10010002m.g Eutrema salsugineum Thhalv10010002m.g I 0.678
Thhalv10019659m.g Eutrema salsugineum Thhalv10019659m.g I 0.788
chr2.CM0018.470.nd Lotus japonicus chr2.CM0018.470.nd I 0.760
ERF022 Arabidopsis thaliana AT1G33760 I 0.677
POPTR_0001s18180 Populus trichocarpa POPTR_0001s18180 I 0.716
Bo2g072910 Brassica oleracea Bo2g072910 I 0.798
Bo5g086680 Brassica oleracea Bo5g086680 I 0.678
Bo6g094210 Brassica oleracea Bo6g094210 I 0.838
Bo6g113020 Brassica oleracea Bo6g113020 I 0.783
Bo8g027240 Brassica oleracea Bo8g027240 I 0.682
Bra007975 Brassica rapa Bra007975 I 0.783
Bra010210 Brassica rapa Bra010210 I 0.684
Bra016136 Brassica rapa Bra016136 I 0.786
fgenesh2_kg.2__1406__AT1G71450.1 Arabidopsis lyrata fgenesh2_kg.2__1406__AT1G71450.1 I 0.798
GLYMA01G44140 Glycine max GLYMA01G44140 I 0.760
GLYMA11G01640 Glycine max GLYMA11G01640 I 0.760
MTR_5g008550 Medicago truncatula MTR_5g008550 I 0.681
MTR_5g008590 Medicago truncatula MTR_5g008590 I 0.760
PGSC0003DMG400017813 Solanum tuberosum PGSC0003DMG400017813 I 0.716
PGSC0003DMG400018054 Solanum tuberosum PGSC0003DMG400018054 I 0.728
cassava43172.valid.m1 Manihot esculenta cassava43172.valid.m1 I 0.732
POPTR_0013s10340 Populus trichocarpa POPTR_0013s10340 I 0.742
POPTR_0019s10420 Populus trichocarpa POPTR_0019s10420 I 0.747
PRUPE_ppa012354mg Prunus persica PRUPE_ppa012354mg I 0.751
Solyc11g042560.1 Solanum lycopersicum Solyc11g042560.1 I 0.699
Solyc11g042580.1 Solanum lycopersicum Solyc11g042580.1 I 0.729
TCM_036269 Theobroma cacao TCM_036269 I 0.713
TCM_036270 Theobroma cacao TCM_036270 I 0.696
VIT_18s0001g05850 Vitis vinifera VIT_18s0001g05850 I 0.693
VIT_18s0001g05890 Vitis vinifera VIT_18s0001g05890 I 0.701
Cla012665 Citrullus lanatus Cla012665 I 0.746
Pm004269 Prunus mume Pm004269 I 0.751
Pm004272 Prunus mume Pm004272 I 0.677
27805.m000021 Ricinus communis 27805.m000021 I 0.677
28118.m000034 Ricinus communis 28118.m000034 I 0.724