Bra016136 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra016136 T001097_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF021
M06593_2.00 		Arabidopsis thaliana
HNYCDYCDYCDYCRCCGHCD
HGDCGGYGRHGRHGRHGRND		 Dap-seq
OMalley et al.(2016)
AT1G71450_col_a 		0.825 0.980
ERF021
M06594_2.00 		Arabidopsis thaliana
NHNNCRCCGHCDH
DHGDCGGYGNNDN		 Dap-seq
OMalley et al.(2016)
AT1G71450_colamp_a 		0.825 0.980
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra016136.1-P AP2 21 72

Links

Other AP2 family TFs
Other Brassica rapa TFs

108 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo6g113020 Brassica oleracea Bo6g113020 I 0.831
fgenesh2_kg.2__1406__AT1G71450.1 Arabidopsis lyrata fgenesh2_kg.2__1406__AT1G71450.1 I 0.825
Bo2g072910 Brassica oleracea Bo2g072910 I 0.825
ERF021 Arabidopsis thaliana AT1G71450 D 0.825
Cagra.2418s0001 Capsella grandiflora Cagra.2418s0001 I 0.825
Carubv10022349m.g Capsella rubella Carubv10022349m.g I 0.825
Thhalv10019659m.g Eutrema salsugineum Thhalv10019659m.g I 0.816
Bra007975 Brassica rapa Bra007975 I 0.810
MDP0000283350 Malus domestica MDP0000283350 I 0.800
GLYMA11G01640 Glycine max GLYMA11G01640 I 0.787
GLYMA01G44140 Glycine max GLYMA01G44140 I 0.787
MTR_5g008590 Medicago truncatula MTR_5g008590 I 0.787
chr2.CM0018.470.nd Lotus japonicus chr2.CM0018.470.nd I 0.787
Bra003924 Brassica rapa Bra003924 I 0.786
Bo6g094210 Brassica oleracea Bo6g094210 I 0.786
gene27021-v1.0-hybrid Fragaria vesca gene27021-v1.0-hybrid I 0.785
cassava8552.m1 Manihot esculenta cassava8552.m1 I 0.785
Ciclev10023857m.g Citrus clementina Ciclev10023857m.g I 0.783
orange1.1g035756m.g Citrus sinensis orange1.1g035756m.g I 0.783
Cucsa.237150 Cucumis sativus Cucsa.237150 I 0.782
Bostr.10273s0203 Boechera stricta Bostr.10273s0203 I 0.781
PRUPE_ppa012354mg Prunus persica PRUPE_ppa012354mg I 0.781
Pm004269 Prunus mume Pm004269 I 0.781
Eucgr.F02974 Eucalyptus grandis Eucgr.F02974 I 0.778
Cla012665 Citrullus lanatus Cla012665 I 0.776
SapurV1A.1130s0100 Salix purpurea SapurV1A.1130s0100 I 0.773
SapurV1A.1331s0040 Salix purpurea SapurV1A.1331s0040 I 0.773
POPTR_0019s10420 Populus trichocarpa POPTR_0019s10420 I 0.773
SapurV1A.0551s0030 Salix purpurea SapurV1A.0551s0030 I 0.770
evm.TU.supercontig_21.69 Carica papaya evm.TU.supercontig_21.69 I 0.768
POPTR_0013s10340 Populus trichocarpa POPTR_0013s10340 I 0.767
PGSC0003DMG400018054 Solanum tuberosum PGSC0003DMG400018054 I 0.767
Gorai.009G266600 Gossypium raimondii Gorai.009G266600 I 0.766
cassava43172.valid.m1 Manihot esculenta cassava43172.valid.m1 I 0.763
Solyc11g042580.1 Solanum lycopersicum Solyc11g042580.1 I 0.762
28118.m000034 Ricinus communis 28118.m000034 I 0.760
TCM_036269 Theobroma cacao TCM_036269 I 0.753
Eucgr.F02975 Eucalyptus grandis Eucgr.F02975 I 0.751
evm.TU.supercontig_21.70 Carica papaya evm.TU.supercontig_21.70 I 0.750
PGSC0003DMG400017813 Solanum tuberosum PGSC0003DMG400017813 I 0.748
Solyc11g042560.1 Solanum lycopersicum Solyc11g042560.1 I 0.745
Lus10041050.g Linum usitatissimum Lus10041050.g I 0.744
Lus10006173.g Linum usitatissimum Lus10006173.g I 0.743
POPTR_0001s18180 Populus trichocarpa POPTR_0001s18180 I 0.742
chr2.CM0018.610.nd Lotus japonicus chr2.CM0018.610.nd I 0.742
Gorai.005G116500 Gossypium raimondii Gorai.005G116500 I 0.740
Gorai.009G266700 Gossypium raimondii Gorai.009G266700 I 0.736
TCM_036270 Theobroma cacao TCM_036270 I 0.733
Carubv10012215m.g Capsella rubella Carubv10012215m.g I 0.731
VIT_18s0001g05890 Vitis vinifera VIT_18s0001g05890 I 0.727
Ciclev10024063m.g Citrus clementina Ciclev10024063m.g I 0.724
orange1.1g046901m.g Citrus sinensis orange1.1g046901m.g I 0.724
VIT_18s0001g05850 Vitis vinifera VIT_18s0001g05850 I 0.720
Bra010210 Brassica rapa Bra010210 I 0.714
Bo5g086680 Brassica oleracea Bo5g086680 I 0.714
Bo8g027240 Brassica oleracea Bo8g027240 I 0.713
gene27017-v1.0-hybrid Fragaria vesca gene27017-v1.0-hybrid I 0.712
Pm004272 Prunus mume Pm004272 I 0.710
Bostr.3359s0006 Boechera stricta Bostr.3359s0006 I 0.710
PRUPE_ppa018178mg Prunus persica PRUPE_ppa018178mg I 0.710
Thhalv10010002m.g Eutrema salsugineum Thhalv10010002m.g I 0.708
ERF022 Arabidopsis thaliana AT1G33760 I 0.707
MTR_5g008550 Medicago truncatula MTR_5g008550 I 0.707
27805.m000021 Ricinus communis 27805.m000021 I 0.706
GLYMA01G44130 Glycine max GLYMA01G44130 I 0.704
AMTR_s00099p00039760 Amborella trichopoda AMTR_s00099p00039760 I 0.702
Si026882m.g Setaria italica Si026882m.g I 0.701
VIT_15s0046g00310 Vitis vinifera VIT_15s0046g00310 I 0.700
MDP0000122739 Malus domestica MDP0000122739 I 0.698
MDP0000151428 Malus domestica MDP0000151428 I 0.698
MDP0000122740 Malus domestica MDP0000122740 I 0.698
Cla012661 Citrullus lanatus Cla012661 I 0.694
Cucsa.237170 Cucumis sativus Cucsa.237170 I 0.694
Bra028009 Brassica rapa Bra028009 I 0.693
SapurV1A.1130s0090 Salix purpurea SapurV1A.1130s0090 I 0.691
SapurV1A.1331s0050 Salix purpurea SapurV1A.1331s0050 I 0.691
AMTR_s00021p00223240 Amborella trichopoda AMTR_s00021p00223240 I 0.690
Ca_15064 Cicer arietinum Ca_15064 I 0.690
SapurV1A.0551s0040 Salix purpurea SapurV1A.0551s0040 I 0.689
POPTR_0019s10430 Populus trichocarpa POPTR_0019s10430 I 0.689
SapurV1A.3106s0010 Salix purpurea SapurV1A.3106s0010 I 0.689
POPTR_0013s10330 Populus trichocarpa POPTR_0013s10330 I 0.689
Carubv10011715m.g Capsella rubella Carubv10011715m.g I 0.687
Bo6g046850 Brassica oleracea Bo6g046850 I 0.687
POPTR_0003s05300 Populus trichocarpa POPTR_0003s05300 I 0.684
TCM_005130 Theobroma cacao TCM_005130 I 0.683
Gorai.008G126000 Gossypium raimondii Gorai.008G126000 I 0.683
GLYMA19G44580 Glycine max GLYMA19G44580 I 0.683
LPERR11G07100 Leersia perrieri LPERR11G07100 I 0.682
BRADI4G21265 Brachypodium distachyon BRADI4G21265 I 0.681
OMERI11G06840 Oryza meridionalis OMERI11G06840 I 0.681
ONIVA11G08160 Oryza nivara ONIVA11G08160 I 0.681
OPUNC11G07750 Oryza punctata OPUNC11G07750 I 0.681
ORGLA11G0070000 Oryza glaberrima ORGLA11G0070000 I 0.681
BGIOSGA034227 Oryza indica BGIOSGA034227 I 0.681
Pavir.J26137 Panicum virgatum Pavir.J26137 I 0.681
Pavir.J22217 Panicum virgatum Pavir.J22217 I 0.681
Sb05g007135 Sorghum bicolor Sb05g007135 I 0.681
OS11G0242300 Oryza sativa OS11G0242300 I 0.681
AC198403.3_FG001 Zea mays AC198403.3_FG001 I 0.681
ORUFI11G08240 Oryza rufipogon ORUFI11G08240 I 0.681
OGLUM11G07800 Oryza glumaepatula OGLUM11G07800 I 0.681
Traes_2BL_9CD6E043A Triticum aestivum Traes_2BL_9CD6E043A I 0.680
Eucgr.F02976 Eucalyptus grandis Eucgr.F02976 I 0.680
Lus10002953.g Linum usitatissimum Lus10002953.g I 0.680
GSMUA_Achr2G20760_001 Musa acuminata GSMUA_Achr2G20760_001 I 0.680
TRIUR3_32168 Triticum urartu TRIUR3_32168 I 0.678
cassava45911.m1 Manihot esculenta cassava45911.m1 I 0.678