Pavir.J26137 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.J26137 T009612_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF021
M06593_2.00 		Arabidopsis thaliana
HNYCDYCDYCDYCRCCGHCD
HGDCGGYGRHGRHGRHGRND		 Dap-seq
OMalley et al.(2016)
AT1G71450_col_a 		0.684 0.800
ERF021
M06594_2.00 		Arabidopsis thaliana
NHNNCRCCGHCDH
DHGDCGGYGNNDN		 Dap-seq
OMalley et al.(2016)
AT1G71450_colamp_a 		0.684 0.800
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J26137.1.p AP2 18 69

Links

Other AP2 family TFs
Other Panicum virgatum TFs

118 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA034227 Oryza indica BGIOSGA034227 I 0.820
OGLUM11G07800 Oryza glumaepatula OGLUM11G07800 I 0.820
OMERI11G06840 Oryza meridionalis OMERI11G06840 I 0.820
ONIVA11G08160 Oryza nivara ONIVA11G08160 I 0.820
OPUNC11G07750 Oryza punctata OPUNC11G07750 I 0.820
ORGLA11G0070000 Oryza glaberrima ORGLA11G0070000 I 0.820
ORUFI11G08240 Oryza rufipogon ORUFI11G08240 I 0.820
OS11G0242300 Oryza sativa OS11G0242300 I 0.820
Sb05g007135 Sorghum bicolor Sb05g007135 I 0.820
Pavir.J22217 Panicum virgatum Pavir.J22217 I 0.820
LPERR11G07100 Leersia perrieri LPERR11G07100 I 0.818
BRADI4G21265 Brachypodium distachyon BRADI4G21265 I 0.817
GSMUA_Achr2G20760_001 Musa acuminata GSMUA_Achr2G20760_001 I 0.817
F775_17299 Aegilops tauschii F775_17299 I 0.812
MLOC_55144 Hordeum vulgare MLOC_55144 I 0.812
Traes_4AL_D2D7703821 Triticum aestivum Traes_4AL_D2D7703821 I 0.812
Traes_4BS_DD5E68382 Triticum aestivum Traes_4BS_DD5E68382 I 0.812
Traes_4DS_97AC77E13 Triticum aestivum Traes_4DS_97AC77E13 I 0.812
TRIUR3_32331 Triticum urartu TRIUR3_32331 I 0.812
Si026882m.g Setaria italica Si026882m.g I 0.807
AC198403.3_FG001 Zea mays AC198403.3_FG001 I 0.801
OB11G16300 Oryza brachyantha OB11G16300 I 0.800
GSMUA_Achr11G12650_001 Musa acuminata GSMUA_Achr11G12650_001 N 0.796
GSMUA_Achr8G16250_001 Musa acuminata GSMUA_Achr8G16250_001 I 0.788
Traes_2BL_9CD6E043A Triticum aestivum Traes_2BL_9CD6E043A I 0.785
TRIUR3_32168 Triticum urartu TRIUR3_32168 I 0.785
LPERR04G10650 Leersia perrieri LPERR04G10650 N 0.763
OMERI04G12360 Oryza meridionalis OMERI04G12360 N 0.762
ONIVA04G11950 Oryza nivara ONIVA04G11950 N 0.762
ORGLA04G0108200 Oryza glaberrima ORGLA04G0108200 N 0.762
ORUFI04G15010 Oryza rufipogon ORUFI04G15010 N 0.762
OPUNC02G18630 Oryza punctata OPUNC02G18630 N 0.745
BGIOSGA006249 Oryza indica BGIOSGA006249 N 0.743
LPERR02G16700 Leersia perrieri LPERR02G16700 N 0.743
OB02G28310 Oryza brachyantha OB02G28310 N 0.743
OGLUM02G20980 Oryza glumaepatula OGLUM02G20980 N 0.743
OMERI02G20440 Oryza meridionalis OMERI02G20440 N 0.743
ONIVA02G22690 Oryza nivara ONIVA02G22690 N 0.743
ORUFI02G21740 Oryza rufipogon ORUFI02G21740 N 0.743
OS02G0558700 Oryza sativa OS02G0558700 N 0.743
TCM_036269 Theobroma cacao TCM_036269 I 0.735
evm.TU.supercontig_21.70 Carica papaya evm.TU.supercontig_21.70 I 0.734
VIT_18s0001g05850 Vitis vinifera VIT_18s0001g05850 I 0.731
Pm004272 Prunus mume Pm004272 I 0.728
PRUPE_ppa018178mg Prunus persica PRUPE_ppa018178mg I 0.727
Gorai.009G266600 Gossypium raimondii Gorai.009G266600 I 0.726
BRADI3G45997 Brachypodium distachyon BRADI3G45997 N 0.723
PGSC0003DMG400018054 Solanum tuberosum PGSC0003DMG400018054 I 0.719
gene27021-v1.0-hybrid Fragaria vesca gene27021-v1.0-hybrid I 0.719
evm.TU.supercontig_21.69 Carica papaya evm.TU.supercontig_21.69 I 0.718
Gorai.005G116500 Gossypium raimondii Gorai.005G116500 I 0.718
cassava43172.valid.m1 Manihot esculenta cassava43172.valid.m1 I 0.716
cassava8552.m1 Manihot esculenta cassava8552.m1 I 0.716
gene27017-v1.0-hybrid Fragaria vesca gene27017-v1.0-hybrid I 0.716
MDP0000122739 Malus domestica MDP0000122739 I 0.715
MDP0000122740 Malus domestica MDP0000122740 I 0.715
MDP0000151428 Malus domestica MDP0000151428 I 0.715
PGSC0003DMG400017813 Solanum tuberosum PGSC0003DMG400017813 I 0.714
GLYMA01G44130 Glycine max GLYMA01G44130 I 0.711
PRUPE_ppa012354mg Prunus persica PRUPE_ppa012354mg I 0.711
Pm004269 Prunus mume Pm004269 I 0.711
28118.m000034 Ricinus communis 28118.m000034 I 0.711
chr2.CM0018.610.nd Lotus japonicus chr2.CM0018.610.nd I 0.711
POPTR_0013s10340 Populus trichocarpa POPTR_0013s10340 I 0.710
POPTR_0019s10420 Populus trichocarpa POPTR_0019s10420 I 0.710
SapurV1A.1130s0100 Salix purpurea SapurV1A.1130s0100 I 0.710
SapurV1A.1331s0040 Salix purpurea SapurV1A.1331s0040 I 0.710
Cla012665 Citrullus lanatus Cla012665 I 0.709
Cucsa.237150 Cucumis sativus Cucsa.237150 I 0.709
GLYMA01G44140 Glycine max GLYMA01G44140 I 0.708
GLYMA11G01640 Glycine max GLYMA11G01640 I 0.708
MTR_5g008590 Medicago truncatula MTR_5g008590 I 0.708
chr2.CM0018.470.nd Lotus japonicus chr2.CM0018.470.nd I 0.708
Bo8g027240 Brassica oleracea Bo8g027240 I 0.706
SapurV1A.1130s0090 Salix purpurea SapurV1A.1130s0090 I 0.705
SapurV1A.1331s0050 Salix purpurea SapurV1A.1331s0050 I 0.705
Eucgr.F02974 Eucalyptus grandis Eucgr.F02974 I 0.704
MDP0000283350 Malus domestica MDP0000283350 I 0.704
POPTR_0013s10330 Populus trichocarpa POPTR_0013s10330 I 0.703
Ciclev10023857m.g Citrus clementina Ciclev10023857m.g I 0.703
orange1.1g035756m.g Citrus sinensis orange1.1g035756m.g I 0.703
SapurV1A.0551s0040 Salix purpurea SapurV1A.0551s0040 I 0.703
SapurV1A.3106s0010 Salix purpurea SapurV1A.3106s0010 I 0.703
POPTR_0001s18180 Populus trichocarpa POPTR_0001s18180 I 0.702
Cla012661 Citrullus lanatus Cla012661 I 0.702
Cucsa.237170 Cucumis sativus Cucsa.237170 I 0.702
Bra010210 Brassica rapa Bra010210 I 0.701
OPUNC04G11630 Oryza punctata OPUNC04G11630 N 0.701
SapurV1A.0551s0030 Salix purpurea SapurV1A.0551s0030 I 0.701
Thhalv10010002m.g Eutrema salsugineum Thhalv10010002m.g I 0.701
ERF022 Arabidopsis thaliana AT1G33760 I 0.700
POPTR_0019s10430 Populus trichocarpa POPTR_0019s10430 I 0.700
Solyc11g042560.1 Solanum lycopersicum Solyc11g042560.1 I 0.699
Ca_15064 Cicer arietinum Ca_15064 I 0.698
27805.m000021 Ricinus communis 27805.m000021 I 0.698
Eucgr.F02975 Eucalyptus grandis Eucgr.F02975 I 0.698
Bo5g086680 Brassica oleracea Bo5g086680 I 0.697
POPTR_0003s05300 Populus trichocarpa POPTR_0003s05300 I 0.697
Solyc11g042580.1 Solanum lycopersicum Solyc11g042580.1 I 0.695
TCM_036270 Theobroma cacao TCM_036270 I 0.695
Eucgr.F02976 Eucalyptus grandis Eucgr.F02976 I 0.695
Gorai.009G266700 Gossypium raimondii Gorai.009G266700 I 0.695
Carubv10012215m.g Capsella rubella Carubv10012215m.g I 0.694
Lus10002953.g Linum usitatissimum Lus10002953.g I 0.694
AMTR_s00099p00039760 Amborella trichopoda AMTR_s00099p00039760 I 0.691
Bra028009 Brassica rapa Bra028009 I 0.690
Carubv10011715m.g Capsella rubella Carubv10011715m.g I 0.690
cassava45911.m1 Manihot esculenta cassava45911.m1 I 0.688
Bostr.3359s0006 Boechera stricta Bostr.3359s0006 I 0.688
ERF021 Arabidopsis thaliana AT1G71450 D 0.684
Bo2g072910 Brassica oleracea Bo2g072910 I 0.684
Bo6g046850 Brassica oleracea Bo6g046850 I 0.684
fgenesh2_kg.2__1406__AT1G71450.1 Arabidopsis lyrata fgenesh2_kg.2__1406__AT1G71450.1 I 0.684
Cagra.2418s0001 Capsella grandiflora Cagra.2418s0001 I 0.684
Carubv10022349m.g Capsella rubella Carubv10022349m.g I 0.684
GLYMA11G03790 Glycine max GLYMA11G03790 I 0.683
Bra016136 Brassica rapa Bra016136 I 0.681
Thhalv10019659m.g Eutrema salsugineum Thhalv10019659m.g I 0.681