Bra010210 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra010210 T001049_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF021
M06593_2.00 		Arabidopsis thaliana
HNYCDYCDYCDYCRCCGHCD
HGDCGGYGRHGRHGRHGRND		 Dap-seq
OMalley et al.(2016)
AT1G71450_col_a 		0.723 0.820
ERF021
M06594_2.00 		Arabidopsis thaliana
NHNNCRCCGHCDH
DHGDCGGYGNNDN		 Dap-seq
OMalley et al.(2016)
AT1G71450_colamp_a 		0.723 0.820
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra010210.1-P AP2 17 68

Links

Other AP2 family TFs
Other Brassica rapa TFs

113 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo5g086680 Brassica oleracea Bo5g086680 I 0.806
Gorai.009G266700 Gossypium raimondii Gorai.009G266700 I 0.800
TCM_036270 Theobroma cacao TCM_036270 I 0.791
GLYMA01G44130 Glycine max GLYMA01G44130 I 0.790
Bo8g027240 Brassica oleracea Bo8g027240 I 0.778
POPTR_0013s10330 Populus trichocarpa POPTR_0013s10330 I 0.776
POPTR_0019s10430 Populus trichocarpa POPTR_0019s10430 I 0.776
evm.TU.supercontig_21.70 Carica papaya evm.TU.supercontig_21.70 I 0.776
SapurV1A.0551s0040 Salix purpurea SapurV1A.0551s0040 I 0.776
SapurV1A.3106s0010 Salix purpurea SapurV1A.3106s0010 I 0.776
Thhalv10010002m.g Eutrema salsugineum Thhalv10010002m.g I 0.774
TCM_036269 Theobroma cacao TCM_036269 I 0.773
ERF022 Arabidopsis thaliana AT1G33760 I 0.772
Gorai.009G266600 Gossypium raimondii Gorai.009G266600 I 0.769
Carubv10012215m.g Capsella rubella Carubv10012215m.g I 0.767
Lus10002953.g Linum usitatissimum Lus10002953.g I 0.766
Bra028009 Brassica rapa Bra028009 I 0.765
cassava45911.m1 Manihot esculenta cassava45911.m1 I 0.763
VIT_18s0001g05850 Vitis vinifera VIT_18s0001g05850 I 0.761
Bostr.3359s0006 Boechera stricta Bostr.3359s0006 I 0.761
evm.TU.supercontig_21.69 Carica papaya evm.TU.supercontig_21.69 I 0.761
Cla012665 Citrullus lanatus Cla012665 I 0.760
Bo6g046850 Brassica oleracea Bo6g046850 I 0.759
27805.m000021 Ricinus communis 27805.m000021 I 0.759
PGSC0003DMG400018054 Solanum tuberosum PGSC0003DMG400018054 I 0.758
POPTR_0003s05300 Populus trichocarpa POPTR_0003s05300 I 0.755
PRUPE_ppa012354mg Prunus persica PRUPE_ppa012354mg I 0.755
Pm004269 Prunus mume Pm004269 I 0.755
cassava43172.valid.m1 Manihot esculenta cassava43172.valid.m1 I 0.755
POPTR_0019s10420 Populus trichocarpa POPTR_0019s10420 I 0.754
cassava8552.m1 Manihot esculenta cassava8552.m1 I 0.754
Cucsa.237150 Cucumis sativus Cucsa.237150 I 0.754
SapurV1A.1130s0100 Salix purpurea SapurV1A.1130s0100 I 0.754
SapurV1A.1331s0040 Salix purpurea SapurV1A.1331s0040 I 0.754
Carubv10011715m.g Capsella rubella Carubv10011715m.g I 0.753
gene27021-v1.0-hybrid Fragaria vesca gene27021-v1.0-hybrid I 0.751
POPTR_0013s10340 Populus trichocarpa POPTR_0013s10340 I 0.749
Lus10041052.g Linum usitatissimum Lus10041052.g N 0.749
Ciclev10023857m.g Citrus clementina Ciclev10023857m.g I 0.746
orange1.1g035756m.g Citrus sinensis orange1.1g035756m.g I 0.746
GLYMA01G44140 Glycine max GLYMA01G44140 I 0.745
GLYMA11G01640 Glycine max GLYMA11G01640 I 0.745
MTR_5g008590 Medicago truncatula MTR_5g008590 I 0.745
PGSC0003DMG400017813 Solanum tuberosum PGSC0003DMG400017813 I 0.745
POPTR_0001s18180 Populus trichocarpa POPTR_0001s18180 I 0.745
chr2.CM0018.470.nd Lotus japonicus chr2.CM0018.470.nd I 0.745
Eucgr.F02974 Eucalyptus grandis Eucgr.F02974 I 0.742
SapurV1A.1130s0090 Salix purpurea SapurV1A.1130s0090 I 0.742
SapurV1A.1331s0050 Salix purpurea SapurV1A.1331s0050 I 0.742
chr2.CM0018.610.nd Lotus japonicus chr2.CM0018.610.nd I 0.741
Pm004272 Prunus mume Pm004272 I 0.739
PRUPE_ppa018178mg Prunus persica PRUPE_ppa018178mg I 0.738
Gorai.005G116500 Gossypium raimondii Gorai.005G116500 I 0.738
scaffold_103754.1 Arabidopsis lyrata scaffold_103754.1 I 0.737
Eucgr.F02975 Eucalyptus grandis Eucgr.F02975 I 0.736
MDP0000283350 Malus domestica MDP0000283350 I 0.736
28118.m000034 Ricinus communis 28118.m000034 I 0.734
SapurV1A.0551s0030 Salix purpurea SapurV1A.0551s0030 I 0.733
AMTR_s00099p00039760 Amborella trichopoda AMTR_s00099p00039760 I 0.730
gene27017-v1.0-hybrid Fragaria vesca gene27017-v1.0-hybrid I 0.730
Lus10003513.g Linum usitatissimum Lus10003513.g N 0.730
Cla012661 Citrullus lanatus Cla012661 I 0.729
Cucsa.237170 Cucumis sativus Cucsa.237170 I 0.729
Solyc11g042580.1 Solanum lycopersicum Solyc11g042580.1 I 0.726
MDP0000122739 Malus domestica MDP0000122739 I 0.726
MDP0000122740 Malus domestica MDP0000122740 I 0.726
MDP0000151428 Malus domestica MDP0000151428 I 0.726
ERF021 Arabidopsis thaliana AT1G71450 D 0.723
Bo2g072910 Brassica oleracea Bo2g072910 I 0.723
fgenesh2_kg.2__1406__AT1G71450.1 Arabidopsis lyrata fgenesh2_kg.2__1406__AT1G71450.1 I 0.723
Cagra.2418s0001 Capsella grandiflora Cagra.2418s0001 I 0.723
Carubv10022349m.g Capsella rubella Carubv10022349m.g I 0.723
Eucgr.F02976 Eucalyptus grandis Eucgr.F02976 I 0.723
Solyc11g042560.1 Solanum lycopersicum Solyc11g042560.1 I 0.722
Ciclev10024063m.g Citrus clementina Ciclev10024063m.g I 0.722
orange1.1g046901m.g Citrus sinensis orange1.1g046901m.g I 0.722
Si026882m.g Setaria italica Si026882m.g I 0.721
Thhalv10019659m.g Eutrema salsugineum Thhalv10019659m.g I 0.720
Bra016136 Brassica rapa Bra016136 I 0.714
AC198403.3_FG001 Zea mays AC198403.3_FG001 I 0.713
MTR_5g008550 Medicago truncatula MTR_5g008550 I 0.712
Bra007975 Brassica rapa Bra007975 I 0.708
Bo6g113020 Brassica oleracea Bo6g113020 I 0.707
GSMUA_Achr2G20760_001 Musa acuminata GSMUA_Achr2G20760_001 I 0.703
LPERR11G07100 Leersia perrieri LPERR11G07100 I 0.702
Ca_15064 Cicer arietinum Ca_15064 I 0.702
BGIOSGA034227 Oryza indica BGIOSGA034227 I 0.701
BRADI4G21265 Brachypodium distachyon BRADI4G21265 I 0.701
OB11G16300 Oryza brachyantha OB11G16300 I 0.701
OGLUM11G07800 Oryza glumaepatula OGLUM11G07800 I 0.701
OMERI11G06840 Oryza meridionalis OMERI11G06840 I 0.701
ONIVA11G08160 Oryza nivara ONIVA11G08160 I 0.701
OPUNC11G07750 Oryza punctata OPUNC11G07750 I 0.701
ORGLA11G0070000 Oryza glaberrima ORGLA11G0070000 I 0.701
ORUFI11G08240 Oryza rufipogon ORUFI11G08240 I 0.701
OS11G0242300 Oryza sativa OS11G0242300 I 0.701
Sb05g007135 Sorghum bicolor Sb05g007135 I 0.701
Pavir.J22217 Panicum virgatum Pavir.J22217 I 0.701
Pavir.J26137 Panicum virgatum Pavir.J26137 I 0.701
Lus10006173.g Linum usitatissimum Lus10006173.g I 0.698
F775_17299 Aegilops tauschii F775_17299 I 0.696
MLOC_55144 Hordeum vulgare MLOC_55144 I 0.696
Traes_4AL_D2D7703821 Triticum aestivum Traes_4AL_D2D7703821 I 0.696
Traes_4BS_DD5E68382 Triticum aestivum Traes_4BS_DD5E68382 I 0.696
Traes_4DS_97AC77E13 Triticum aestivum Traes_4DS_97AC77E13 I 0.696
TRIUR3_32331 Triticum urartu TRIUR3_32331 I 0.696
Lus10041050.g Linum usitatissimum Lus10041050.g I 0.696
GSMUA_Achr11G12650_001 Musa acuminata GSMUA_Achr11G12650_001 N 0.695
GSMUA_Achr8G16250_001 Musa acuminata GSMUA_Achr8G16250_001 I 0.687
VIT_18s0001g05890 Vitis vinifera VIT_18s0001g05890 I 0.686
Bo6g094210 Brassica oleracea Bo6g094210 I 0.684
Bra003924 Brassica rapa Bra003924 I 0.684
Bostr.10273s0203 Boechera stricta Bostr.10273s0203 I 0.679