Bra024222 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra024222 T001158_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF054
M06647_2.00 		Arabidopsis thaliana
NNNNNNNNNHHDSCRCCGHC
GDCGGYGSHDDNNNNNNNNN		 Dap-seq
OMalley et al.(2016)
At4g28140_col_a 		0.811 0.980
ERF054
M06648_2.00 		Arabidopsis thaliana
NNNNHDBCRCCGHCM
KGDCGGYGVHDNNNN		 Dap-seq
OMalley et al.(2016)
At4g28140_colamp_a 		0.811 0.980
AT5G65130
M06686_2.00 		Arabidopsis thaliana
YCDYCDCCRCCGCCN
NGGCGGYGGHGRHGR		 Dap-seq
OMalley et al.(2016)
At5g65130_col_a 		0.682 0.740
AT5G65130
M06687_2.00 		Arabidopsis thaliana
NNNNHNNHDSCRCCGMCMW
WKGKCGGYGSHDNNDNNNN		 Dap-seq
OMalley et al.(2016)
At5g65130_colamp_a 		0.682 0.740
ERF055
M06577_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_col_a 		0.680 0.840
ERF055
M06578_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_colamp_a 		0.680 0.840
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra024222.1-P AP2 75 126

Links

Other AP2 family TFs
Other Brassica rapa TFs

36 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ERF055 Arabidopsis thaliana AT1G36060 D 0.680
ERF054 Arabidopsis thaliana AT4G28140 D 0.811
AT5G65130 Arabidopsis thaliana AT5G65130 D 0.682
scaffold_304438.1 Arabidopsis lyrata scaffold_304438.1 I 0.727
chr5.CM0909.290.nc Lotus japonicus chr5.CM0909.290.nc I 0.708
scaffold_803239.1 Arabidopsis lyrata scaffold_803239.1 I 0.682
TCM_020321 Theobroma cacao TCM_020321 I 0.679
VIT_19s0014g03180 Vitis vinifera VIT_19s0014g03180 I 0.719
Bostr.20910s0012 Boechera stricta Bostr.20910s0012 I 0.680
Bostr.7867s0648 Boechera stricta Bostr.7867s0648 I 0.811
Bostr.7903s0066 Boechera stricta Bostr.7903s0066 I 0.691
Cagra.1225s0083 Capsella grandiflora Cagra.1225s0083 I 0.811
Cagra.8551s0004 Capsella grandiflora Cagra.8551s0004 I 0.691
Carubv10005203m.g Capsella rubella Carubv10005203m.g I 0.811
Carubv10012538m.g Capsella rubella Carubv10012538m.g I 0.680
Carubv10014129m.g Capsella rubella Carubv10014129m.g I 0.691
Gorai.008G153600 Gossypium raimondii Gorai.008G153600 I 0.681
Gorai.012G130600 Gossypium raimondii Gorai.012G130600 I 0.704
Thhalv10025862m.g Eutrema salsugineum Thhalv10025862m.g I 0.802
AMTR_s00107p00095070 Amborella trichopoda AMTR_s00107p00095070 I 0.678
PRUPE_ppa010345mg Prunus persica PRUPE_ppa010345mg I 0.680
GSMUA_Achr3G01650_001 Musa acuminata GSMUA_Achr3G01650_001 I 0.680
GSMUA_Achr10G19030_001 Musa acuminata GSMUA_Achr10G19030_001 I 0.680
fgenesh2_kg.7__1395__AT4G28140.1 Arabidopsis lyrata fgenesh2_kg.7__1395__AT4G28140.1 I 0.811
fgenesh2_kg.1__3660__AT1G36060.1 Arabidopsis lyrata fgenesh2_kg.1__3660__AT1G36060.1 I 0.680
Bra040381 Brassica rapa Bra040381 I 0.680
Bra031146 Brassica rapa Bra031146 I 0.719
Bra026280 Brassica rapa Bra026280 I 0.795
Bra010383 Brassica rapa Bra010383 I 0.811
Bo8g102130 Brassica oleracea Bo8g102130 I 0.727
Bo8g054130 Brassica oleracea Bo8g054130 I 0.811
Bo7g111910 Brassica oleracea Bo7g111910 I 0.828
Bo5g069450 Brassica oleracea Bo5g069450 I 0.680
Bo3g100470 Brassica oleracea Bo3g100470 I 0.677
Bo1g051230 Brassica oleracea Bo1g051230 I 0.782
ERF053 Arabidopsis thaliana AT2G20880 I 0.727