MTR_3g102100 (Medicago truncatula)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 MTR_3g102100 T002836_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-1
M06582_2.00 		Arabidopsis thaliana
NHDYCRCCGMCAH
DTGKCGGYGRHDN		 Dap-seq
OMalley et al.(2016)
RAP21_col_a 		0.772 0.900
RAP2-1
M06583_2.00 		Arabidopsis thaliana
NHDBCACCGACAHHDNNNNN
NNNNNHDDTGTCGGTGVHDN		 Dap-seq
OMalley et al.(2016)
RAP21_colamp_a 		0.772 0.900
ERF008
M00844_2.00 		Arabidopsis thaliana
SHRCCGHC
GDCGGYDS		 PBM
Franco-Zorrilla et al.(2014)
DEAR3 		0.744 0.920
ERF008
M01048_2.00 		Arabidopsis thaliana
CRCCGMCN
NGKCGGYG		 PBM
Sullivan et al.(2014)
pTH7672 		0.744 0.920
ERF008
M06602_2.00 		Arabidopsis thaliana
NNNNNBCACCGACAHHN
NDDTGTCGGTGVNNNNN		 Dap-seq
OMalley et al.(2016)
DEAR3_col_a 		0.744 0.920
ERF008
M06603_2.00 		Arabidopsis thaliana
NNBCACCGACAWH
DWTGTCGGTGVNN		 Dap-seq
OMalley et al.(2016)
DEAR3_colamp_a 		0.744 0.920
RAP2-10
M00850_2.00 		Arabidopsis thaliana
NNRCCGHCNN
NNGDCGGYNN		 PBM
Franco-Zorrilla et al.(2014)
DEAR4 		0.740 0.920
ERF010
M06690_2.00 		Arabidopsis thaliana
HHNHHDYCACCGHCD
HGDCGGTGRHDDNDD		 Dap-seq
OMalley et al.(2016)
DEAR2_col_a 		0.739 0.880
ERF010
M06691_2.00 		Arabidopsis thaliana
NNNHDBCACCGACAH
DTGTCGGTGVHDNNN		 Dap-seq
OMalley et al.(2016)
DEAR2_colamp_a 		0.739 0.880
ERF011
M06628_2.00 		Arabidopsis thaliana
YHNHHDYCACCGHCN
NGDCGGTGRHDDNDR		 Dap-seq
OMalley et al.(2016)
CEJ1_col_a 		0.739 0.860
ERF011
M06629_2.00 		Arabidopsis thaliana
NDNCACCGACMHH
DDKGTCGGTGNHN		 Dap-seq
OMalley et al.(2016)
CEJ1_colamp_a 		0.739 0.860
RAP2-9
M06633_2.00 		Arabidopsis thaliana
NNNNNNNDBCACCGACMHH
DDKGTCGGTGVHNNNNNNN		 Dap-seq
OMalley et al.(2016)
DEAR5_col_a 		0.721 0.920
RAP2-9
M06634_2.00 		Arabidopsis thaliana
NCACCGACMHH
DDKGTCGGTGN		 Dap-seq
OMalley et al.(2016)
DEAR5_colamp_a 		0.721 0.920
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AES73329 AP2 43 94

Links

Other AP2 family TFs
Other Medicago truncatula TFs

161 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RAP2-1 Arabidopsis thaliana AT1G46768 D 0.772
ERF008 Arabidopsis thaliana AT2G23340 D 0.744
ERF011 Arabidopsis thaliana AT3G50260 D 0.739
RAP2-9 Arabidopsis thaliana AT4G06746 D 0.721
RAP2-10 Arabidopsis thaliana AT4G36900 D 0.740
ERF010 Arabidopsis thaliana AT5G67190 D 0.739
BGIOSGA014220 Oryza indica BGIOSGA014220 I 0.717
BGIOSGA014221 Oryza indica BGIOSGA014221 I 0.717
BGIOSGA022380 Oryza indica BGIOSGA022380 I 0.719
Bo1g004940 Brassica oleracea Bo1g004940 I 0.731
Bo4g151460 Brassica oleracea Bo4g151460 I 0.740
Bo7g063980 Brassica oleracea Bo7g063980 I 0.739
Bo7g118430 Brassica oleracea Bo7g118430 I 0.740
Bo8g079660 Brassica oleracea Bo8g079660 I 0.739
Bo9g020380 Brassica oleracea Bo9g020380 I 0.733
Bra011744 Brassica rapa Bra011744 I 0.706
Bra012140 Brassica rapa Bra012140 I 0.731
Bra014056 Brassica rapa Bra014056 I 0.764
Bra017811 Brassica rapa Bra017811 I 0.740
Bra032173 Brassica rapa Bra032173 I 0.740
Bra036061 Brassica rapa Bra036061 I 0.739
Bra037124 Brassica rapa Bra037124 I 0.733
BRADI1G48320 Brachypodium distachyon BRADI1G48320 I 0.719
BRADI5G24110 Brachypodium distachyon BRADI5G24110 I 0.717
DEAR3 Arabidopsis lyrata fgenesh2_kg.4__264__AT2G23340.1 I 0.740
CEJ1 Arabidopsis lyrata fgenesh2_kg.5__1372__AT3G50260.1 I 0.739
RAP2.9 Arabidopsis lyrata fgenesh2_kg.6__2823__AT4G06746.1 I 0.721
GLYMA01G39540 Glycine max GLYMA01G39540 I 0.723
GLYMA04G04355 Glycine max GLYMA04G04355 I 0.751
GLYMA05G19050 Glycine max GLYMA05G19050 I 0.722
GLYMA06G04490 Glycine max GLYMA06G04490 I 0.751
GLYMA11G05700 Glycine max GLYMA11G05700 I 0.723
GLYMA14G09320 Glycine max GLYMA14G09320 I 0.764
GLYMA17G18580 Glycine max GLYMA17G18580 I 0.710
GLYMA17G35860 Glycine max GLYMA17G35860 I 0.757
GRMZM2G119865 Zea mays GRMZM2G119865 I 0.687
GRMZM2G174917 Zea mays GRMZM2G174917 I 0.717
GRMZM2G301860 Zea mays GRMZM2G301860 I 0.686
GRMZM2G421033 Zea mays GRMZM2G421033 I 0.717
GSMUA_Achr3G13190_001 Musa acuminata GSMUA_Achr3G13190_001 I 0.746
GSMUA_Achr4G20280_001 Musa acuminata GSMUA_Achr4G20280_001 I 0.749
GSMUA_Achr5G22190_001 Musa acuminata GSMUA_Achr5G22190_001 I 0.722
GSMUA_Achr7G05410_001 Musa acuminata GSMUA_Achr7G05410_001 I 0.709
GSMUA_Achr7G20800_001 Musa acuminata GSMUA_Achr7G20800_001 I 0.687
GSMUA_Achr8G15640_001 Musa acuminata GSMUA_Achr8G15640_001 I 0.678
GSMUA_Achr9G11310_001 Musa acuminata GSMUA_Achr9G11310_001 I 0.690
GSMUA_AchrUn_randomG12040_001 Musa acuminata GSMUA_AchrUn_randomG12040_001 I 0.742
GSMUA_AchrUn_randomG26940_001 Musa acuminata GSMUA_AchrUn_randomG26940_001 I 0.735
LPERR04G23120 Leersia perrieri LPERR04G23120 I 0.717
LPERR06G04000 Leersia perrieri LPERR06G04000 I 0.719
MLOC_81350 Hordeum vulgare MLOC_81350 I 0.718
MTR_1g019110 Medicago truncatula MTR_1g019110 I 0.778
MTR_5g016750 Medicago truncatula MTR_5g016750 I 0.721
OBART06G04460 Oryza barthii OBART06G04460 I 0.719
OGLUM04G27370 Oryza glumaepatula OGLUM04G27370 I 0.717
OGLUM06G04560 Oryza glumaepatula OGLUM06G04560 I 0.719
OMERI04G22870 Oryza meridionalis OMERI04G22870 I 0.717
ONIVA04G25910 Oryza nivara ONIVA04G25910 I 0.717
ONIVA06G05630 Oryza nivara ONIVA06G05630 I 0.719
OPUNC06G04240 Oryza punctata OPUNC06G04240 I 0.719
ORGLA04G0237600 Oryza glaberrima ORGLA04G0237600 I 0.717
ORGLA06G0041000 Oryza glaberrima ORGLA06G0041000 I 0.719
ORUFI06G04420 Oryza rufipogon ORUFI06G04420 I 0.719
OS04G0648900 Oryza sativa OS04G0648900 I 0.717
OS06G0166400 Oryza sativa OS06G0166400 I 0.719
PGSC0003DMG400004005 Solanum tuberosum PGSC0003DMG400004005 I 0.741
PGSC0003DMG400007951 Solanum tuberosum PGSC0003DMG400007951 I 0.746
PGSC0003DMG400034101 Solanum tuberosum PGSC0003DMG400034101 I 0.720
POPTR_0002s12550 Populus trichocarpa POPTR_0002s12550 I 0.758
POPTR_0005s18430 Populus trichocarpa POPTR_0005s18430 I 0.726
POPTR_0007s10750 Populus trichocarpa POPTR_0007s10750 I 0.726
POPTR_0014s02530 Populus trichocarpa POPTR_0014s02530 I 0.758
PRUPE_ppa012302mg Prunus persica PRUPE_ppa012302mg I 0.739
PRUPE_ppa012516mg Prunus persica PRUPE_ppa012516mg I 0.750
Sb06g030660 Sorghum bicolor Sb06g030660 I 0.717
Sb10g004580 Sorghum bicolor Sb10g004580 I 0.719
RAP2.1 Arabidopsis lyrata scaffold_104275.1 I 0.774
RAP2.10 Arabidopsis lyrata scaffold_700370.1 I 0.740
DEAR2 Arabidopsis lyrata scaffold_803390.1 I 0.739
Solyc04g078640.1 Solanum lycopersicum Solyc04g078640.1 I 0.746
TCM_000669 Theobroma cacao TCM_000669 I 0.751
TCM_033791 Theobroma cacao TCM_033791 I 0.762
Traes_2BL_1E57B73B21 Triticum aestivum Traes_2BL_1E57B73B21 I 0.718
VIT_07s0031g00190 Vitis vinifera VIT_07s0031g00190 I 0.712
VIT_18s0001g10150 Vitis vinifera VIT_18s0001g10150 I 0.716
Ca_01556 Cicer arietinum Ca_01556 I 0.823
Ca_02170 Cicer arietinum Ca_02170 I 0.721
Cla014175 Citrullus lanatus Cla014175 I 0.705
Cla020550 Citrullus lanatus Cla020550 I 0.689
Cla020961 Citrullus lanatus Cla020961 I 0.764
Cla022937 Citrullus lanatus Cla022937 I 0.757
28718.m000038 Ricinus communis 28718.m000038 I 0.751
30170.m013843 Ricinus communis 30170.m013843 I 0.758
cassava17493.valid.m1 Manihot esculenta cassava17493.valid.m1 I 0.726
cassava47353.m1 Manihot esculenta cassava47353.m1 I 0.758
cassava9153.m1 Manihot esculenta cassava9153.m1 I 0.758
Cucsa.102560 Cucumis sativus Cucsa.102560 I 0.705
Cucsa.352470 Cucumis sativus Cucsa.352470 I 0.764
Cucsa.367300 Cucumis sativus Cucsa.367300 I 0.689
Cucsa.395960 Cucumis sativus Cucsa.395960 I 0.757
mgf000289m Mimulus guttatus mgf000289m I 0.746
mgf006561m Mimulus guttatus mgf006561m I 0.737
mgf021115m Mimulus guttatus mgf021115m I 0.743
mgf025363m Mimulus guttatus mgf025363m I 0.733
Aquca_007_00717 Aquilegia coerulea Aquca_007_00717 I 0.760
Aquca_010_00625 Aquilegia coerulea Aquca_010_00625 I 0.758
Bostr.0568s0141 Boechera stricta Bostr.0568s0141 I 0.739
Bostr.12302s0138 Boechera stricta Bostr.12302s0138 I 0.753
Bostr.27895s0153 Boechera stricta Bostr.27895s0153 I 0.740
Bostr.3877s0058 Boechera stricta Bostr.3877s0058 I 0.684
Bostr.6864s0220 Boechera stricta Bostr.6864s0220 I 0.701
Bostr.7867s1581 Boechera stricta Bostr.7867s1581 I 0.740
Cagra.0342s0005 Capsella grandiflora Cagra.0342s0005 I 0.739
Cagra.0706s0004 Capsella grandiflora Cagra.0706s0004 I 0.739
Cagra.1735s0005 Capsella grandiflora Cagra.1735s0005 I 0.753
Cagra.29993s0001 Capsella grandiflora Cagra.29993s0001 I 0.740
Cagra.4909s0050 Capsella grandiflora Cagra.4909s0050 I 0.740
Carubv10005767m.g Capsella rubella Carubv10005767m.g I 0.740
Carubv10010891m.g Capsella rubella Carubv10010891m.g I 0.753
Carubv10018162m.g Capsella rubella Carubv10018162m.g I 0.739
Carubv10024198m.g Capsella rubella Carubv10024198m.g I 0.740
Carubv10027999m.g Capsella rubella Carubv10027999m.g I 0.739
Ciclev10002733m.g Citrus clementina Ciclev10002733m.g I 0.754
Ciclev10026687m.g Citrus clementina Ciclev10026687m.g I 0.751
Eucgr.F00192 Eucalyptus grandis Eucgr.F00192 I 0.762
Eucgr.F02317 Eucalyptus grandis Eucgr.F02317 I 0.764
Eucgr.F02319 Eucalyptus grandis Eucgr.F02319 I 0.764
Eucgr.H02094 Eucalyptus grandis Eucgr.H02094 I 0.751
gene09137-v1.0-hybrid Fragaria vesca gene09137-v1.0-hybrid I 0.757
gene23873-v1.0-hybrid Fragaria vesca gene23873-v1.0-hybrid I 0.752
Gorai.003G026100 Gossypium raimondii Gorai.003G026100 I 0.751
Gorai.003G099700 Gossypium raimondii Gorai.003G099700 I 0.751
Gorai.008G077900 Gossypium raimondii Gorai.008G077900 I 0.751
Gorai.009G214300 Gossypium raimondii Gorai.009G214300 I 0.764
Gorai.010G021900 Gossypium raimondii Gorai.010G021900 I 0.751
Lus10009373.g Linum usitatissimum Lus10009373.g I 0.700
Lus10010043.g Linum usitatissimum Lus10010043.g I 0.760
Lus10018727.g Linum usitatissimum Lus10018727.g I 0.758
MDP0000125673 Malus domestica MDP0000125673 I 0.752
MDP0000179962 Malus domestica MDP0000179962 I 0.752
MDP0000756341 Malus domestica MDP0000756341 I 0.733
orange1.1g031669m.g Citrus sinensis orange1.1g031669m.g I 0.751
orange1.1g041516m.g Citrus sinensis orange1.1g041516m.g I 0.754
Pavir.J04844 Panicum virgatum Pavir.J04844 I 0.717
Pavir.J20437 Panicum virgatum Pavir.J20437 I 0.719
Pavir.J27349 Panicum virgatum Pavir.J27349 I 0.717
Pavir.J34361 Panicum virgatum Pavir.J34361 I 0.719
SapurV1A.0167s0190 Salix purpurea SapurV1A.0167s0190 I 0.760
SapurV1A.0423s0180 Salix purpurea SapurV1A.0423s0180 I 0.758
SapurV1A.0689s0100 Salix purpurea SapurV1A.0689s0100 I 0.726
SapurV1A.1340s0030 Salix purpurea SapurV1A.1340s0030 I 0.712
SapurV1A.1616s0040 Salix purpurea SapurV1A.1616s0040 I 0.712
SapurV1A.2355s0030 Salix purpurea SapurV1A.2355s0030 I 0.758
Thhalv10000354m.g Eutrema salsugineum Thhalv10000354m.g I 0.698
Thhalv10004985m.g Eutrema salsugineum Thhalv10004985m.g I 0.739
Thhalv10026288m.g Eutrema salsugineum Thhalv10026288m.g I 0.740
Thhalv10029052m.g Eutrema salsugineum Thhalv10029052m.g I 0.716
PK15612.1 Cannabis sativa PK15612.1 I 0.752
LjSGA_004289.2 Lotus japonicus LjSGA_004289.2 I 0.723
LjSGA_007705.1 Lotus japonicus LjSGA_007705.1 I 0.763
LjSGA_134387.1 Lotus japonicus LjSGA_134387.1 I 0.741