MTR_6g466000 (Medicago truncatula)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 MTR_6g466000 T002921_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.736 0.840
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.736 0.840
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.725 0.840
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.725 0.840
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.725 0.840
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.725 0.840
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.715 0.840
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.715 0.840
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.715 0.840
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.687 0.740
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.687 0.740
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.687 0.740
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.687 0.740
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.687 0.740
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.687 0.740
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.684 0.740
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.684 0.740
DREB1E
M09709_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1E_01 		0.680 0.780
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KEH26611 AP2 55 106

Links

Other AP2 family TFs
Other Medicago truncatula TFs

160 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RSKR_0000406200 Rhabditophanes kr3021 RSKR_0000406200 N
L893_g13248 Steinernema glaseri L893_g13248 N
L893_g20500 Steinernema glaseri L893_g20500 N
MhA1_Contig194.frz3.gene8 Meloidogyne hapla MhA1_Contig194.frz3.gene8 N
NBR_0000829501 Nippostrongylus brasiliensis NBR_0000829501 N
nDi.2.2.2.g04775 Dirofilaria immitis nDi.2.2.2.g04775 N
NECAME_02646 Necator americanus NECAME_02646 N
nOo.2.0.1.g08044 Onchocerca ochengi nOo.2.0.1.g08044 N
PTRK_0000018500 Parastrongyloides trichosuri PTRK_0000018500 N
RSKR_0000313900 Rhabditophanes kr3021 RSKR_0000313900 N
L892_g23809 Steinernema scapterisci L892_g23809 N
scaffold429-EXSNAP2012.6 Pristionchus exspectatus scaffold429-EXSNAP2012.6 N
scaffold50-EXSNAP2012.1 Pristionchus exspectatus scaffold50-EXSNAP2012.1 N
SMUV_0001020501 Syphacia muris SMUV_0001020501 N
SPAL_0000159200 Strongyloides papillosus SPAL_0000159200 N
SSTP_0000308900 Strongyloides stercoralis SSTP_0000308900 N
SVE_1011400 Strongyloides venezuelensis SVE_1011400 N
TCLT_0000508901 Thelazia callipaeda TCLT_0000508901 N
TCNE_0000967201 Toxocara canis TCNE_0000967201 N
ANCDUO_19443 Ancylostoma duodenale ANCDUO_19443 N
CBG05270 Caenorhabditis briggsae CBG05270 N
CBN30611 Caenorhabditis brenneri CBN30611 N
CJA10118 Caenorhabditis japonica CJA10118 N
CRE19235 Caenorhabditis remanei CRE19235 N
LOAG_12834 Loa loa LOAG_12834 N
nhr-32 Caenorhabditis elegans WBGene00003626 N
WBGene00239074 Onchocerca volvulus WBGene00239074 N
Minc11538 Meloidogyne incognita Minc11538 N
ANCCEY_02206 Ancylostoma ceylanicum ANCCEY_02206 N
WUBG_12380 Wuchereria bancrofti WUBG_12380 N
augustus_masked-nMf.1.1.scaf06448-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf06448-processed-gene-0.0 N
BTMF_0000954001 Brugia timori BTMF_0000954001 N
GPLIN_000607300 Globodera pallida GPLIN_000607300 N
GPLIN_000663400 Globodera pallida GPLIN_000663400 N
GPUH_0002529501 Gongylonema pulchrum GPUH_0002529501 N
L596_g18686 Steinernema carpocapsae L596_g18686 N
L596_g18692 Steinernema carpocapsae L596_g18692 N
L892_g2121 Steinernema scapterisci L892_g2121 N