OMERI04G16410 (Oryza meridionalis)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 OMERI04G16410 T003440_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF055
M06577_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_col_a 		0.824 0.920
ERF055
M06578_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_colamp_a 		0.824 0.920
RAP2-4
M01612_2.00 		Arabidopsis thaliana
NRCCGHCMNN
NNKGDCGGYN		 PBM
Weirauch et al.(2014)
pTH8092 		0.808 0.880
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OMERI04G16410.1 AP2 210 261

Links

Other AP2 family TFs
Other Oryza meridionalis TFs

436 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ERF055 Arabidopsis thaliana AT1G36060 D 0.824
ERF054 Arabidopsis thaliana AT4G28140 D
AT5G65130 Arabidopsis thaliana AT5G65130 D
scaffold_304438.1 Arabidopsis lyrata scaffold_304438.1 I 0.795
chr5.CM0909.290.nc Lotus japonicus chr5.CM0909.290.nc I
scaffold_803239.1 Arabidopsis lyrata scaffold_803239.1 I
TCM_020321 Theobroma cacao TCM_020321 I 0.788
VIT_19s0014g03180 Vitis vinifera VIT_19s0014g03180 I 0.700
Bostr.20910s0012 Boechera stricta Bostr.20910s0012 I 0.824
Bostr.7867s0648 Boechera stricta Bostr.7867s0648 I
Bostr.7903s0066 Boechera stricta Bostr.7903s0066 I 0.819
Cagra.1225s0083 Capsella grandiflora Cagra.1225s0083 I
Cagra.8551s0004 Capsella grandiflora Cagra.8551s0004 I 0.819
Carubv10005203m.g Capsella rubella Carubv10005203m.g I
Carubv10012538m.g Capsella rubella Carubv10012538m.g I 0.824
Carubv10014129m.g Capsella rubella Carubv10014129m.g I 0.819
Gorai.008G153600 Gossypium raimondii Gorai.008G153600 I 0.827
Gorai.012G130600 Gossypium raimondii Gorai.012G130600 I 0.757
Thhalv10025862m.g Eutrema salsugineum Thhalv10025862m.g I
AMTR_s00107p00095070 Amborella trichopoda AMTR_s00107p00095070 I
PRUPE_ppa010345mg Prunus persica PRUPE_ppa010345mg I 0.783
GSMUA_Achr3G01650_001 Musa acuminata GSMUA_Achr3G01650_001 I 0.814
GSMUA_Achr10G19030_001 Musa acuminata GSMUA_Achr10G19030_001 I 0.824
fgenesh2_kg.7__1395__AT4G28140.1 Arabidopsis lyrata fgenesh2_kg.7__1395__AT4G28140.1 I
fgenesh2_kg.1__3660__AT1G36060.1 Arabidopsis lyrata fgenesh2_kg.1__3660__AT1G36060.1 I 0.824
Bra040381 Brassica rapa Bra040381 I 0.824
Bra031146 Brassica rapa Bra031146 I 0.787
Bra026280 Brassica rapa Bra026280 I
Bra010383 Brassica rapa Bra010383 I
Bo8g102130 Brassica oleracea Bo8g102130 I 0.795
Bo8g054130 Brassica oleracea Bo8g054130 I
Bo7g111910 Brassica oleracea Bo7g111910 I
Bo5g069450 Brassica oleracea Bo5g069450 I 0.824
Bo3g100470 Brassica oleracea Bo3g100470 I
Bo1g051230 Brassica oleracea Bo1g051230 I
ERF053 Arabidopsis thaliana AT2G20880 I 0.795