Carubv10013771m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10013771m.g T007877_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2A
M06655_2.00 		Arabidopsis thaliana
NNNNHDHMACCGMCWYHNNNN
NNNNDRWGKCGGTKDHDNNNN		 Dap-seq
OMalley et al.(2016)
DREB2_col_a 		0.768 0.939
DREB2A
M06656_2.00 		Arabidopsis thaliana
NHNHMACCGMCWTWD
HWAWGKCGGTKDNDN		 Dap-seq
OMalley et al.(2016)
DREB2_colamp_a 		0.768 0.939
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.685 0.857
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10013771m AP2 154 205

Links

Other AP2 family TFs
Other Capsella rubella TFs

38 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
DREB2A Arabidopsis thaliana AT5G05410 D 0.768
PK07402.1 Cannabis sativa PK07402.1 D 0.685
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I 0.680
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.678
Cla006713 Citrullus lanatus Cla006713 I 0.682
29820.m001008 Ricinus communis 29820.m001008 I 0.685
Cucsa.136780 Cucumis sativus Cucsa.136780 I 0.683
Bostr.13129s0423 Boechera stricta Bostr.13129s0423 I 0.765
Bostr.19424s1037 Boechera stricta Bostr.19424s1037 I 0.776
Cagra.1504s0045 Capsella grandiflora Cagra.1504s0045 I 0.774
Cagra.1655s0066 Capsella grandiflora Cagra.1655s0066 I 0.794
Cagra.7053s0020 Capsella grandiflora Cagra.7053s0020 I 0.699
Carubv10001099m.g Capsella rubella Carubv10001099m.g I 0.774
Carubv10023556m.g Capsella rubella Carubv10023556m.g I 0.699
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.683
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.697
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.697
Thhalv10021161m.g Eutrema salsugineum Thhalv10021161m.g I 0.754
chr1.LjT01D01.90.nd Lotus japonicus chr1.LjT01D01.90.nd I 0.712
DREB2B Arabidopsis thaliana AT3G11020 I 0.705
Bra034159 Brassica rapa Bra034159 I 0.752
Bo1g141310 Brassica oleracea Bo1g141310 I 0.742
Bo2g006960 Brassica oleracea Bo2g006960 I 0.786
Bo3g063910 Brassica oleracea Bo3g063910 I 0.737
Bo5g136930 Brassica oleracea Bo5g136930 I 0.729
Bra001386 Brassica rapa Bra001386 I 0.738
Bra005852 Brassica rapa Bra005852 I 0.782
Bra028759 Brassica rapa Bra028759 I 0.786
Bra029889 Brassica rapa Bra029889 I 0.729
Solyc06g050520.1 Solanum lycopersicum Solyc06g050520.1 I 0.712
DREB2B Arabidopsis lyrata fgenesh2_kg.3__1148__AT3G11020.1 I 0.762
DREB2A Arabidopsis lyrata fgenesh2_kg.6__469__AT5G05410.1 I 0.774
GLYMA07G19221 Glycine max GLYMA07G19221 I 0.706
GLYMA18G43750 Glycine max GLYMA18G43750 I 0.696
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.682
MTR_5g083340 Medicago truncatula MTR_5g083340 I 0.679
PGSC0003DMG401023951 Solanum tuberosum PGSC0003DMG401023951 I 0.718
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.683