Solyc06g050520.1 (Solanum lycopersicum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Solyc06g050520.1 T005477_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2A
M06655_2.00 		Arabidopsis thaliana
NNNNHDHMACCGMCWYHNNNN
NNNNDRWGKCGGTKDHDNNNN		 Dap-seq
OMalley et al.(2016)
DREB2_col_a 		0.712 0.857
DREB2A
M06656_2.00 		Arabidopsis thaliana
NHNHMACCGMCWTWD
HWAWGKCGGTKDNDN		 Dap-seq
OMalley et al.(2016)
DREB2_colamp_a 		0.712 0.857
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc06g050520.1.1 AP2 80 131

Links

Other AP2 family TFs
Other Solanum lycopersicum TFs

28 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG401023951 Solanum tuberosum PGSC0003DMG401023951 I 0.785
GLYMA07G19221 Glycine max GLYMA07G19221 I 0.746
GLYMA18G43750 Glycine max GLYMA18G43750 I 0.736
chr1.LjT01D01.90.nd Lotus japonicus chr1.LjT01D01.90.nd I 0.736
29820.m001008 Ricinus communis 29820.m001008 I 0.728
Bo2g006960 Brassica oleracea Bo2g006960 I 0.720
Bra028759 Brassica rapa Bra028759 I 0.720
Bra005852 Brassica rapa Bra005852 I 0.713
DREB2A Arabidopsis thaliana AT5G05410 D 0.712
DREB2A Arabidopsis lyrata fgenesh2_kg.6__469__AT5G05410.1 I 0.712
Bostr.13129s0423 Boechera stricta Bostr.13129s0423 I 0.712
Cagra.1504s0045 Capsella grandiflora Cagra.1504s0045 I 0.712
Cagra.1655s0066 Capsella grandiflora Cagra.1655s0066 I 0.712
Carubv10001099m.g Capsella rubella Carubv10001099m.g I 0.712
Carubv10013771m.g Capsella rubella Carubv10013771m.g I 0.712
TCM_021596 Theobroma cacao TCM_021596 I 0.707
cassava46663.m1 Manihot esculenta cassava46663.m1 I 0.704
Cagra.7053s0020 Capsella grandiflora Cagra.7053s0020 I 0.701
Carubv10023556m.g Capsella rubella Carubv10023556m.g I 0.701
Bostr.19424s1037 Boechera stricta Bostr.19424s1037 I 0.694
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.693
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.693
Thhalv10021161m.g Eutrema salsugineum Thhalv10021161m.g I 0.692
GSMUA_Achr9G04630_001 Musa acuminata GSMUA_Achr9G04630_001 I 0.688
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.686
DREB2B Arabidopsis lyrata fgenesh2_kg.3__1148__AT3G11020.1 I 0.685
Bo1g141310 Brassica oleracea Bo1g141310 I 0.680
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.678