Bra028759 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra028759 T001193_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2A
M06655_2.00 		Arabidopsis thaliana
NNNNHDHMACCGMCWYHNNNN
NNNNDRWGKCGGTKDHDNNNN		 Dap-seq
OMalley et al.(2016)
DREB2_col_a 		0.760 0.918
DREB2A
M06656_2.00 		Arabidopsis thaliana
NHNHMACCGMCWTWD
HWAWGKCGGTKDNDN		 Dap-seq
OMalley et al.(2016)
DREB2_colamp_a 		0.760 0.918
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.693 0.878
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra028759.1-P AP2 78 129

Links

Other AP2 family TFs
Other Brassica rapa TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo2g006960 Brassica oleracea Bo2g006960 I 0.794
Cagra.1655s0066 Capsella grandiflora Cagra.1655s0066 I 0.786
Carubv10013771m.g Capsella rubella Carubv10013771m.g I 0.786
Bra005852 Brassica rapa Bra005852 I 0.782
Bostr.19424s1037 Boechera stricta Bostr.19424s1037 I 0.768
DREB2A Arabidopsis lyrata fgenesh2_kg.6__469__AT5G05410.1 I 0.767
Cagra.1504s0045 Capsella grandiflora Cagra.1504s0045 I 0.767
Carubv10001099m.g Capsella rubella Carubv10001099m.g I 0.767
DREB2A Arabidopsis thaliana AT5G05410 D 0.760
DREB2B Arabidopsis lyrata fgenesh2_kg.3__1148__AT3G11020.1 I 0.760
Bostr.13129s0423 Boechera stricta Bostr.13129s0423 I 0.757
Thhalv10021161m.g Eutrema salsugineum Thhalv10021161m.g I 0.746
Bra034159 Brassica rapa Bra034159 I 0.745
Bra001386 Brassica rapa Bra001386 I 0.738
Bo3g063910 Brassica oleracea Bo3g063910 I 0.737
Bo1g141310 Brassica oleracea Bo1g141310 I 0.735
PGSC0003DMG401023951 Solanum tuberosum PGSC0003DMG401023951 I 0.726
Bo5g136930 Brassica oleracea Bo5g136930 I 0.721
Bra029889 Brassica rapa Bra029889 I 0.721
Solyc06g050520.1 Solanum lycopersicum Solyc06g050520.1 I 0.720
chr1.LjT01D01.90.nd Lotus japonicus chr1.LjT01D01.90.nd I 0.719
GLYMA07G19221 Glycine max GLYMA07G19221 I 0.713
Cagra.7053s0020 Capsella grandiflora Cagra.7053s0020 I 0.706
Carubv10023556m.g Capsella rubella Carubv10023556m.g I 0.706
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.705
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.705
GLYMA18G43750 Glycine max GLYMA18G43750 I 0.704
DREB2B Arabidopsis thaliana AT3G11020 I 0.698
PK07402.1 Cannabis sativa PK07402.1 D 0.693
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.691
Cucsa.136780 Cucumis sativus Cucsa.136780 I 0.691
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.691
Cla006713 Citrullus lanatus Cla006713 I 0.690
29820.m001008 Ricinus communis 29820.m001008 I 0.689
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I 0.687
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.686
MTR_5g083340 Medicago truncatula MTR_5g083340 I 0.686
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.686
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I 0.683
cassava19475.valid.m1 Manihot esculenta cassava19475.valid.m1 I 0.682
MTR_7g070220 Medicago truncatula MTR_7g070220 I 0.681
GSMUA_Achr9G04630_001 Musa acuminata GSMUA_Achr9G04630_001 I 0.680