Bra005852 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra005852 T001017_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2A
M06655_2.00 		Arabidopsis thaliana
NNNNHDHMACCGMCWYHNNNN
NNNNDRWGKCGGTKDHDNNNN		 Dap-seq
OMalley et al.(2016)
DREB2_col_a 		0.758 0.918
DREB2A
M06656_2.00 		Arabidopsis thaliana
NHNHMACCGMCWTWD
HWAWGKCGGTKDNDN		 Dap-seq
OMalley et al.(2016)
DREB2_colamp_a 		0.758 0.918
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.684 0.857
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra005852.1-P AP2 77 128

Links

Other AP2 family TFs
Other Brassica rapa TFs

37 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo2g006960 Brassica oleracea Bo2g006960 I 0.782
Cagra.1655s0066 Capsella grandiflora Cagra.1655s0066 I 0.782
Carubv10013771m.g Capsella rubella Carubv10013771m.g I 0.782
Bra028759 Brassica rapa Bra028759 I 0.782
Bostr.19424s1037 Boechera stricta Bostr.19424s1037 I 0.764
Cagra.1504s0045 Capsella grandiflora Cagra.1504s0045 I 0.762
Carubv10001099m.g Capsella rubella Carubv10001099m.g I 0.762
DREB2A Arabidopsis lyrata fgenesh2_kg.6__469__AT5G05410.1 I 0.762
DREB2A Arabidopsis thaliana AT5G05410 D 0.758
DREB2B Arabidopsis lyrata fgenesh2_kg.3__1148__AT3G11020.1 I 0.755
Bostr.13129s0423 Boechera stricta Bostr.13129s0423 I 0.752
Bra001386 Brassica rapa Bra001386 I 0.744
Bo3g063910 Brassica oleracea Bo3g063910 I 0.743
Thhalv10021161m.g Eutrema salsugineum Thhalv10021161m.g I 0.741
Bra034159 Brassica rapa Bra034159 I 0.740
Bo1g141310 Brassica oleracea Bo1g141310 I 0.730
PGSC0003DMG401023951 Solanum tuberosum PGSC0003DMG401023951 I 0.720
Bo5g136930 Brassica oleracea Bo5g136930 I 0.716
Bra029889 Brassica rapa Bra029889 I 0.716
Solyc06g050520.1 Solanum lycopersicum Solyc06g050520.1 I 0.713
chr1.LjT01D01.90.nd Lotus japonicus chr1.LjT01D01.90.nd I 0.711
GLYMA07G19221 Glycine max GLYMA07G19221 I 0.705
Carubv10023556m.g Capsella rubella Carubv10023556m.g I 0.698
Cagra.7053s0020 Capsella grandiflora Cagra.7053s0020 I 0.698
GLYMA18G43750 Glycine max GLYMA18G43750 I 0.695
DREB2B Arabidopsis thaliana AT3G11020 I 0.693
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.692
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.692
29820.m001008 Ricinus communis 29820.m001008 I 0.687
PK07402.1 Cannabis sativa PK07402.1 D 0.684
Cucsa.136780 Cucumis sativus Cucsa.136780 I 0.684
Cla006713 Citrullus lanatus Cla006713 I 0.683
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.683
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.682
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I 0.681
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.681
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.678