chr1.LjT03I11.120.nd (Lotus japonicus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 chr1.LjT03I11.120.nd T010154_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF003
M06667_2.00 		Arabidopsis thaliana
DYCDCCRCCGYMDHHDYHN
NDRHDDHKRCGGYGGHGRH		 Dap-seq
OMalley et al.(2016)
ESE3_col_a 		0.849 0.941
ERF003
M06668_2.00 		Arabidopsis thaliana
HDYCKCCGCCGYHDH
DHDRCGGCGGMGRHD		 Dap-seq
OMalley et al.(2016)
ESE3_colamp_a 		0.849 0.941
WIN1
M01603_2.00 		Arabidopsis thaliana
VCRCCGCNNN
NNNGCGGYGB		 PBM
Weirauch et al.(2014)
pTH7566 		0.728 0.804
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr1.LjT03I11.120.nd AP2 6 57

Links

Other AP2 family TFs
Other Lotus japonicus TFs

297 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK20225.1 Cannabis sativa PK20225.1 D
VIT_14s0068g01580 Vitis vinifera VIT_14s0068g01580 I
ONIVA03G12280 Oryza nivara ONIVA03G12280 I
Pavir.Ca01107 Panicum virgatum Pavir.Ca01107 I
TRAES3BF011300020CFD_g Triticum aestivum TRAES3BF011300020CFD_g I
TCM_029711 Theobroma cacao TCM_029711 I
Si039730m.g Setaria italica Si039730m.g I
Si002655m.g Setaria italica Si002655m.g I
Si002517m.g Setaria italica Si002517m.g I
Sb03g001730 Sorghum bicolor Sb03g001730 I
Sb01g040450 Sorghum bicolor Sb01g040450 I
AMTR_s00007p00170710 Amborella trichopoda AMTR_s00007p00170710 I
OS03G0260600 Oryza sativa OS03G0260600 I
OS01G0218100 Oryza sativa OS01G0218100 I
ORUFI03G11650 Oryza rufipogon ORUFI03G11650 I
ORUFI01G08040 Oryza rufipogon ORUFI01G08040 I
ORGLA03G0109100 Oryza glaberrima ORGLA03G0109100 I
ORGLA01G0065100 Oryza glaberrima ORGLA01G0065100 I
OPUNC01G07130 Oryza punctata OPUNC01G07130 I
Gorai.011G034000 Gossypium raimondii Gorai.011G034000 I
MDP0000249969 Malus domestica MDP0000249969 I
Gorai.009G163400 Gossypium raimondii Gorai.009G163400 I
gene29828-v1.0-hybrid Fragaria vesca gene29828-v1.0-hybrid I
evm.TU.supercontig_7.53 Carica papaya evm.TU.supercontig_7.53 I
Eucgr.E02743 Eucalyptus grandis Eucgr.E02743 I
Eucgr.D00509 Eucalyptus grandis Eucgr.D00509 I
Ciclev10016289m.g Citrus clementina Ciclev10016289m.g I
Lus10001885.g Linum usitatissimum Lus10001885.g I
Lus10013917.g Linum usitatissimum Lus10013917.g I
Ca_06386 Cicer arietinum Ca_06386 I
orange1.1g024670m.g Citrus sinensis orange1.1g024670m.g I
Aquca_081_00012 Aquilegia coerulea Aquca_081_00012 I
Cucsa.213230 Cucumis sativus Cucsa.213230 I
Cucsa.200860 Cucumis sativus Cucsa.200860 I
cassava18812.valid.m1 Manihot esculenta cassava18812.valid.m1 I
29900.m001610 Ricinus communis 29900.m001610 I
Cla019977 Citrullus lanatus Cla019977 I
Cla013743 Citrullus lanatus Cla013743 I
OMERI01G07330 Oryza meridionalis OMERI01G07330 I
BGIOSGA003013 Oryza indica BGIOSGA003013 I
SapurV1A.1821s0030 Salix purpurea SapurV1A.1821s0030 I
SapurV1A.1185s0010 Salix purpurea SapurV1A.1185s0010 I
Pavir.Ib01099 Panicum virgatum Pavir.Ib01099 I
BRADI1G67500 Brachypodium distachyon BRADI1G67500 I
BRADI2G03830 Brachypodium distachyon BRADI2G03830 I
Pavir.Eb00095 Panicum virgatum Pavir.Eb00095 I
GLYMA02G15780 Glycine max GLYMA02G15780 I
GLYMA07G32690 Glycine max GLYMA07G32690 I
GLYMA12G33751 Glycine max GLYMA12G33751 I
GLYMA13G36741 Glycine max GLYMA13G36741 I
GRMZM2G016039 Zea mays GRMZM2G016039 I
GRMZM2G043854 Zea mays GRMZM2G043854 I
GRMZM2G088443 Zea mays GRMZM2G088443 I
GRMZM2G166642 Zea mays GRMZM2G166642 I
OB01G17480 Oryza brachyantha OB01G17480 I
OLONG_004075 Oryza longistaminata OLONG_004075 I
OGLUM03G11280 Oryza glumaepatula OGLUM03G11280 I
ONIVA01G09540 Oryza nivara ONIVA01G09540 I
OGLUM01G08450 Oryza glumaepatula OGLUM01G08450 I
OBART03G11320 Oryza barthii OBART03G11320 I
GSMUA_Achr1G21280_001 Musa acuminata GSMUA_Achr1G21280_001 I
OB03G21490 Oryza brachyantha OB03G21490 I
MTR_4g087920 Medicago truncatula MTR_4g087920 I
MTR_2g015890 Medicago truncatula MTR_2g015890 I
MLOC_64390 Hordeum vulgare MLOC_64390 I
LPERR03G10060 Leersia perrieri LPERR03G10060 I
LPERR01G07000 Leersia perrieri LPERR01G07000 I
LPERR01G03590 Leersia perrieri LPERR01G03590 I
Pavir.Ea00157 Panicum virgatum Pavir.Ea00157 I
Pavir.Ea00439 Panicum virgatum Pavir.Ea00439 I
PRUPE_ppa021837mg Prunus persica PRUPE_ppa021837mg N
Thhalv10017546m.g Eutrema salsugineum Thhalv10017546m.g N
Thhalv10006410m.g Eutrema salsugineum Thhalv10006410m.g N
SapurV1A.0189s0140 Salix purpurea SapurV1A.0189s0140 N
SapurV1A.0029s0640 Salix purpurea SapurV1A.0029s0640 N
MDP0000256492 Malus domestica MDP0000256492 N
BRADI2G07050 Brachypodium distachyon BRADI2G07050 N
BHLH106 Arabidopsis thaliana AT2G41130 N
Bo3g035410 Brassica oleracea Bo3g035410 N
Bo4g012960 Brassica oleracea Bo4g012960 N
Bo4g112750 Brassica oleracea Bo4g112750 N
Bo4g190700 Brassica oleracea Bo4g190700 N
Bra004599 Brassica rapa Bra004599 N
Bra014672 Brassica rapa Bra014672 N
Bra016951 Brassica rapa Bra016951 N
Carubv10023903m.g Capsella rubella Carubv10023903m.g N
GSMUA_Achr2G20040_001 Musa acuminata GSMUA_Achr2G20040_001 N
GSMUA_Achr3G03510_001 Musa acuminata GSMUA_Achr3G03510_001 N
Traes_5BL_CBFAD4B59 Triticum aestivum Traes_5BL_CBFAD4B59 N
Bostr.9345s0019 Boechera stricta Bostr.9345s0019 N
Cagra.0578s0007 Capsella grandiflora Cagra.0578s0007 N
Cagra.1642s0077 Capsella grandiflora Cagra.1642s0077 N
Carubv10017947m.g Capsella rubella Carubv10017947m.g N