CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pc13g04920
(
Penicillium chrysogenum
)
APSES
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF04383 (KilA-N)
IPR018004
Pc13g04920
T013987_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
e_gw1.5.76.1
M01652_2.00
Nectria haematococca
NNVTGCABNN
NNVTGCABNN
PBM
Weirauch et al.(2014)
pTH9267
0.857
0.914
HCAG_07413
M01651_2.00
Histoplasma capsulatum
NNNHRYDNNN
NNNHRYDNNN
PBM
Weirauch et al.(2014)
pTH9346
0.837
0.951
stuA
M01649_2.00
Aspergillus nidulans
NNTGCAKNNN
NNNMTGCANN
PBM
Weirauch et al.(2014)
pTH9236
0.710
0.914
stuA
M09761_2.00
Aspergillus nidulans
DBDCGCGWWB
VWWCGCGHVH
Transfac
Matys et al.(2006)
F$STUAP_01
0.710
0.914
For this family, TFs with SR scores >
0.650
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pc13g04920.t1
APSES
335
420
QVEAKGVCVARREDNHMINGTKLLNVAGMTRGRRDGILKSEKLRHVVKIGPMHLKGVWIPFERALEFANKEKITDLLYPLFVHNIG
Links
Other
APSES
family TFs
Other
Penicillium chrysogenum
TFs
150 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Gorai.007G155000
Gossypium raimondii
Gorai.007G155000
N
0.000
30204.m001750
Ricinus communis
30204.m001750
N
0.000
cassava349.valid.m1
Manihot esculenta
cassava349.valid.m1
N
0.000
Cucsa.078210
Cucumis sativus
Cucsa.078210
N
0.000
Bostr.19424s0133
Boechera stricta
Bostr.19424s0133
N
0.000
Bostr.2021s0055
Boechera stricta
Bostr.2021s0055
N
0.000
Carubv10015863m.g
Capsella rubella
Carubv10015863m.g
N
0.000
Carubv10016123m.g
Capsella rubella
Carubv10016123m.g
N
0.000
Ciclev10018446m.g
Citrus clementina
Ciclev10018446m.g
N
0.000
Eucgr.H00795
Eucalyptus grandis
Eucgr.H00795
N
0.000
Eucgr.K02162
Eucalyptus grandis
Eucgr.K02162
N
0.000
evm.TU.supercontig_8.144
Carica papaya
evm.TU.supercontig_8.144
N
0.000
gene17608-v1.0-hybrid
Fragaria vesca
gene17608-v1.0-hybrid
N
0.000
Gorai.001G187100
Gossypium raimondii
Gorai.001G187100
N
0.000
Gorai.001G233800
Gossypium raimondii
Gorai.001G233800
N
0.000
Gorai.004G226000
Gossypium raimondii
Gorai.004G226000
N
0.000
Pm020347
Prunus mume
Pm020347
N
0.000
Lus10011850.g
Linum usitatissimum
Lus10011850.g
N
0.000
Lus10022788.g
Linum usitatissimum
Lus10022788.g
N
0.000
MDP0000155726
Malus domestica
MDP0000155726
N
0.000
MDP0000250529
Malus domestica
MDP0000250529
N
0.000
orange1.1g000147m.g
Citrus sinensis
orange1.1g000147m.g
N
0.000
Pavir.J00429
Panicum virgatum
Pavir.J00429
N
0.000
Pavir.J03231
Panicum virgatum
Pavir.J03231
N
0.000
Pavir.J18859
Panicum virgatum
Pavir.J18859
N
0.000
SapurV1A.0135s0340
Salix purpurea
SapurV1A.0135s0340
N
0.000
SapurV1A.0342s0100
Salix purpurea
SapurV1A.0342s0100
N
0.000
Thhalv10002368m.g
Eutrema salsugineum
Thhalv10002368m.g
N
0.000
PK23540.1
Cannabis sativa
PK23540.1
N
0.000
chr1.LjT36F23.70.nd
Lotus japonicus
chr1.LjT36F23.70.nd
N
0.000
PDK_20s1355591g002
Phoenix dactylifera
PDK_20s1355591g002
N
0.000
GRMZM2G018048
Zea mays
GRMZM2G018048
N
0.000
AMTR_s00045p00026940
Amborella trichopoda
AMTR_s00045p00026940
N
0.000
EAF1B
Arabidopsis thaliana
AT3G24870
N
0.000
EAF1A
Arabidopsis thaliana
AT3G24880
N
0.000
Bo3g083740
Brassica oleracea
Bo3g083740
N
0.000
Bo4g133290
Brassica oleracea
Bo4g133290
N
0.000
Bo7g031610
Brassica oleracea
Bo7g031610
N
0.000
Bra013238
Brassica rapa
Bra013238
N
0.000
Bra032689
Brassica rapa
Bra032689
N
0.000
BRADI2G14372
Brachypodium distachyon
BRADI2G14372
N
0.000
fgenesh2_kg.3__2706__AT3G24880.1
Arabidopsis lyrata
fgenesh2_kg.3__2706__AT3G24880.1
N
0.000
GLYMA03G18725
Glycine max
GLYMA03G18725
N
0.000
GLYMA08G46710
Glycine max
GLYMA08G46710
N
0.000
GLYMA16G14060
Glycine max
GLYMA16G14060
N
0.000
GLYMA18G36628
Glycine max
GLYMA18G36628
N
0.000
AMTR_s00029p00248140
Amborella trichopoda
AMTR_s00029p00248140
N
0.000
GRMZM2G350684
Zea mays
GRMZM2G350684
N
0.000
GSMUA_Achr11G13340_001
Musa acuminata
GSMUA_Achr11G13340_001
N
0.000
GSMUA_Achr1G21080_001
Musa acuminata
GSMUA_Achr1G21080_001
N
0.000
MTR_7g056603
Medicago truncatula
MTR_7g056603
N
0.000
POPTR_0002s24490
Populus trichocarpa
POPTR_0002s24490
N
0.000
POPTR_0014s19020
Populus trichocarpa
POPTR_0014s19020
N
0.000
Sb03g025920
Sorghum bicolor
Sb03g025920
N
0.000
Si000015m.g
Setaria italica
Si000015m.g
N
0.000
Si020947m.g
Setaria italica
Si020947m.g
N
0.000
Solyc06g083420.1
Solanum lycopersicum
Solyc06g083420.1
N
0.000
Solyc09g060080.2
Solanum lycopersicum
Solyc09g060080.2
N
0.000
TCM_002924
Theobroma cacao
TCM_002924
N
0.000
VIT_07s0005g06680
Vitis vinifera
VIT_07s0005g06680
N
0.000
Cla015187
Citrullus lanatus
Cla015187
N
0.000