ENSLACG00000007898 (Latimeria chalumnae)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01388 (ARID) IPR001606 ENSLACG00000007898 T014579_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Arid3b
M01659_2.00 		Mus musculus
NNDATTAAWWN
NWWTTAATHNN		 PBM
Weirauch et al.(2014)
pTH4425 		0.681 0.929
ARID3A
M01658_2.00 		Microcebus murinus
NDATHAWDN
NHWTDATHN		 PBM
Weirauch et al.(2014)
pTH9214 		0.678 0.943
Arid3a
M00115_2.00 		Mus musculus
NDATHADDN
NHHTDATHN		 PBM
Badis et al.(2009)
Arid3a_3875 		0.624 0.800
Arid3a
M01660_2.00 		Mus musculus
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5169 		0.624 0.800
Arid3a
M02651_2.00 		Mus musculus
ATYAAA
TTTRAT		 SELEX
Mathelier et al.(2014)
MA0151.1 		0.678 0.943
ARID3A
M01662_2.00 		Procavia capensis
NNATHDNNN
NNNHDATNN		 PBM
Weirauch et al.(2014)
pTH9384 		0.624 0.800
ARID3A
M09766_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DRI1_01 		0.678 0.943
cfi-1
M01667_2.00 		Caenorhabditis elegans
NNATHDNN
NNHDATNN		 PBM
Weirauch et al.(2014)
pTH5118 		0.678 0.829
retn
M01664_2.00 		Drosophila melanogaster
NDATHRNN
NNYDATHN		 PBM
Weirauch et al.(2014)
pTH5119 		0.627 0.800
retn
M03590_2.00 		Drosophila melanogaster
NNATTRATHN
NDATYAATNN		 SELEX
Nitta et al.(2015)
retn_1 		0.627 0.800
retn
M05899_2.00 		Drosophila melanogaster
AATYAAAM
KTTTRATT		 B1H
Zhu et al.(2011)
retn_SANGER_5_FBgn0004795 		0.627 0.800
retn
M09768_2.00 		Drosophila melanogaster
NNRATTAADN
NHTTAATYNN		 Transfac
Matys et al.(2006)
I$DRI_01 		0.627 0.800
ACYPI009013
M01655_2.00 		Acyrthosiphon pisum
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5117 		0.627 0.743
DDB_G0275333
M01656_2.00 		Dictyostelium discoideum
NNATHDNNNN
NNNNHDATNN		 PBM
Weirauch et al.(2014)
pTH5168 		0.614 0.500
GSPATT00004674001
M01665_2.00 		Paramecium tetraurelia
NNATYHNN
NNDRATNN		 PBM
Weirauch et al.(2014)
pTH5124 		0.485 0.429
TTHERM_00243900
M01666_2.00 		Tetrahymena thermophila
NDDATYANN
NNTRATHHN		 PBM
Weirauch et al.(2014)
pTH5128 		0.508 0.360
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLACP00000008943 ARID/BRIGHT 1 71
ENSLACP00000008944 ARID/BRIGHT 11 87

Links

Other ARID/BRIGHT family TFs
Other Latimeria chalumnae TFs

366 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nhr-7 Caenorhabditis elegans WBGene00003606 D
nhr-3 Caenorhabditis elegans WBGene00003602 D
L893_g32432 Steinernema glaseri L893_g32432 I
NECAME_04545 Necator americanus NECAME_04545 I
nDi.2.2.2.g05078 Dirofilaria immitis nDi.2.2.2.g05078 I
NBR_0001432001 Nippostrongylus brasiliensis NBR_0001432001 I
nAv.1.0.1.g09896 Acanthocheilonema viteae nAv.1.0.1.g09896 I
MhA1_Contig984.frz3.gene20 Meloidogyne hapla MhA1_Contig984.frz3.gene20 I
MhA1_Contig217.frz3.gene7 Meloidogyne hapla MhA1_Contig217.frz3.gene7 I
maker-nMf.1.1.scaf07948-snap-gene-0.4 Meloidogyne floridensis maker-nMf.1.1.scaf07948-snap-gene-0.4 I
L898_g24498 Steinernema monticolum L898_g24498 I
L898_g23965 Steinernema monticolum L898_g23965 I
L898_g10316 Steinernema monticolum L898_g10316 I
nLs.2.1.2.g05858 Litomosoides sigmodontis nLs.2.1.2.g05858 I
L893_g29555 Steinernema glaseri L893_g29555 I
L893_g29388 Steinernema glaseri L893_g29388 I
L893_g27196 Steinernema glaseri L893_g27196 I
L892_g650 Steinernema scapterisci L892_g650 I
L889_g8361 Steinernema feltiae L889_g8361 I
L889_g6303 Steinernema feltiae L889_g6303 I
L889_g5777 Steinernema feltiae L889_g5777 I
L596_g3812 Steinernema carpocapsae L596_g3812 I
L596_g25666 Steinernema carpocapsae L596_g25666 I
L596_g25297 Steinernema carpocapsae L596_g25297 I
L596_g20569 Steinernema carpocapsae L596_g20569 I
snap_masked-nMf.1.1.scaf18837-processed-gene-0.2 Meloidogyne floridensis snap_masked-nMf.1.1.scaf18837-processed-gene-0.2 I
TELCIR_07363 Teladorsagia circumcincta TELCIR_07363 I
TELCIR_05080 Teladorsagia circumcincta TELCIR_05080 I
TELCIR_01879 Teladorsagia circumcincta TELCIR_01879 I
TCNE_0001780601 Toxocara canis TCNE_0001780601 I
TCLT_0000079701 Thelazia callipaeda TCLT_0000079701 I
SVE_0301400 Strongyloides venezuelensis SVE_0301400 I
SVE_0137800 Strongyloides venezuelensis SVE_0137800 I
SSTP_0001234400 Strongyloides stercoralis SSTP_0001234400 I
SSTP_0000831700 Strongyloides stercoralis SSTP_0000831700 I
SPAL_0001436300 Strongyloides papillosus SPAL_0001436300 I
SPAL_0000110800 Strongyloides papillosus SPAL_0000110800 I
NECAME_12696 Necator americanus NECAME_12696 I
SMUV_0000859101 Syphacia muris SMUV_0000859101 I
SMUV_0000428701 Syphacia muris SMUV_0000428701 I
PTRK_0000510500 Parastrongyloides trichosuri PTRK_0000510500 I
PTRK_0000497300 Parastrongyloides trichosuri PTRK_0000497300 I
PEQ_0000633601 Parascaris equorum PEQ_0000633601 I
OFLC_0000776201 Onchocerca flexuosa OFLC_0000776201 I
OESDEN_02943 Oesophagostomum dentatum OESDEN_02943 I
OESDEN_02652 Oesophagostomum dentatum OESDEN_02652 I
nOo.2.0.1.g05901 Onchocerca ochengi nOo.2.0.1.g05901 I
HPLM_0001680701 Haemonchus placei HPLM_0001680701 I
CRE12779 Caenorhabditis remanei CRE12779 I
ANCCAN_18459 Ancylostoma caninum ANCCAN_18459 I
ACOC_0001326501 Angiostrongylus costaricensis ACOC_0001326501 I
ACAC_0000409401 Angiostrongylus cantonensis ACAC_0000409401 I
ACAC_0000239001 Angiostrongylus cantonensis ACAC_0000239001 I
Minc13525 Meloidogyne incognita Minc13525 I
Minc01725 Meloidogyne incognita Minc01725 I
WBGene00241910 Onchocerca volvulus WBGene00241910 I
nhr-119 Caenorhabditis elegans WBGene00003709 I
PPA20304 Pristionchus pacificus PPA20304 I
LOAG_18352 Loa loa LOAG_18352 I
CRE15289 Caenorhabditis remanei CRE15289 I
ANCCEY_03357 Ancylostoma ceylanicum ANCCEY_03357 I
CRE06661 Caenorhabditis remanei CRE06661 I
CJA13646 Caenorhabditis japonica CJA13646 I
CBN31048 Caenorhabditis brenneri CBN31048 I
CBN26258 Caenorhabditis brenneri CBN26258 I
CBN19233 Caenorhabditis brenneri CBN19233 I
CBN18797 Caenorhabditis brenneri CBN18797 I
CBG19594 Caenorhabditis briggsae CBG19594 I
CBG07552 Caenorhabditis briggsae CBG07552 I
CBG06052 Caenorhabditis briggsae CBG06052 I
Bm14724 Brugia malayi Bm14724 I
ANCCEY_05105 Ancylostoma ceylanicum ANCCEY_05105 I
HPBE_0001043101 Heligmosomoides bakeri HPBE_0001043101 I
HCOI02077900 Haemonchus contortus HCOI02077900 I
HCOI01406200 Haemonchus contortus HCOI01406200 I
HCOI00769300 Haemonchus contortus HCOI00769300 I
HCOI00435200 Haemonchus contortus HCOI00435200 I
Hba_14958 Heterorhabditis bacteriophora Hba_14958 I
GPLIN_000268400 Globodera pallida GPLIN_000268400 I
EVEC_0000349901 Enterobius vermicularis EVEC_0000349901 I
DME_0000742401 Dracunculus medinensis DME_0000742401 I
DICVIV_02348 Dictyocaulus viviparus DICVIV_02348 I
BXY_1600300 Bursaphelenchus xylophilus BXY_1600300 I
BXY_0011200 Bursaphelenchus xylophilus BXY_0011200 I
BXY_0008800 Bursaphelenchus xylophilus BXY_0008800 I
BTMF_0000273701 Brugia timori BTMF_0000273701 I
ASU_10946 Ascaris suum ASU_10946 I
ASU_01199 Ascaris suum ASU_01199 I
ASIM_0001589901 Anisakis simplex ASIM_0001589901 I
ASIM_0001309901 Anisakis simplex ASIM_0001309901 I
ASIM_0001301101 Anisakis simplex ASIM_0001301101 I
WUBG_08518 Wuchereria bancrofti WUBG_08518 I
BXY_0740200 Bursaphelenchus xylophilus BXY_0740200 N
MhA1_Contig795.frz3.fgene1 Meloidogyne hapla MhA1_Contig795.frz3.fgene1 N