CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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snap_masked-nMf.1.1.scaf18837-processed-gene-0.2
(
Meloidogyne floridensis
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00105 (zf-C4)
IPR001628
snap_masked-nMf.1.1.scaf18837-processed-gene-0.2
T310459_2.00
WormBase:ParaSite (2015-Oct-22)
NCBI Gene Info:
This gene encodes a member of the Smad family of signal transduction proteins. Smad proteins are phosphorylated and activated by transmembrane serine-threonine receptor kinases in response to transforming growth factor (TGF)-beta signaling. The product of this gene forms homomeric complexes and heteromeric complexes with other activated Smad proteins, which then accumulate in the nucleus and regulate the transcription of target genes. This protein binds to DNA and recognizes an 8-bp palindromic sequence (GTCTAGAC) called the Smad-binding element (SBE). The protein acts as a tumor suppressor and inhibits epithelial cell proliferation. It may also have an inhibitory effect on tumors by reducing angiogenesis and increasing blood vessel hyperpermeability. The encoded protein is a crucial component of the bone morphogenetic protein signaling pathway. The Smad proteins are subject to complex regulation by post-translational modifications. Mutations or deletions in this gene have been shown to result in pancreatic cancer, juvenile polyposis syndrome, and hereditary hemorrhagic telangiectasia syndrome. [provided by RefSeq, May 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-3
M00687_2.00
Caenorhabditis elegans
NNHGDHYANN
NNTRDHCDNN
PBM
Narasimhan et al.(2015)
pTH9163
0.985
0.776
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
snap_masked-nMf.1.1.scaf18837-processed-gene-0.2-mRNA-1
Nuclear receptor
1
67
NVCGDEASGRHYGASTCFGCKGFFRRTVRANKQYNCRYEEKCQIDKVGRNICRACRFQKCLTVGMEP
Links
Other
Nuclear receptor
family TFs
Other
Meloidogyne floridensis
TFs
129 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GPLIN_000669000
Globodera pallida
GPLIN_000669000
I
0.993
Minc13525
Meloidogyne incognita
Minc13525
I
0.993
Minc01725
Meloidogyne incognita
Minc01725
I
0.993
maker-nMf.1.1.scaf07948-snap-gene-0.4
Meloidogyne floridensis
maker-nMf.1.1.scaf07948-snap-gene-0.4
I
0.993
MhA1_Contig217.frz3.gene7
Meloidogyne hapla
MhA1_Contig217.frz3.gene7
I
0.993
BXY_0011200
Bursaphelenchus xylophilus
BXY_0011200
I
0.988
WUBG_08518
Wuchereria bancrofti
WUBG_08518
I
0.985
Bm14724
Brugia malayi
Bm14724
I
0.985
NECAME_04545
Necator americanus
NECAME_04545
I
0.985
WBGene00241910
Onchocerca volvulus
WBGene00241910
I
0.985
nDi.2.2.2.g05078
Dirofilaria immitis
nDi.2.2.2.g05078
I
0.985
CBG07552
Caenorhabditis briggsae
CBG07552
I
0.985
nhr-3
Caenorhabditis elegans
WBGene00003602
D
0.985
nLs.2.1.2.g05858
Litomosoides sigmodontis
nLs.2.1.2.g05858
I
0.985
SMUV_0000428701
Syphacia muris
SMUV_0000428701
I
0.985
L596_g25666
Steinernema carpocapsae
L596_g25666
I
0.985
BTMF_0000273701
Brugia timori
BTMF_0000273701
I
0.985
ASU_10946
Ascaris suum
ASU_10946
I
0.985
ANCCAN_18459
Ancylostoma caninum
ANCCAN_18459
I
0.985
TCLT_0000079701
Thelazia callipaeda
TCLT_0000079701
I
0.985
HCOI02077900
Haemonchus contortus
HCOI02077900
I
0.985
nAv.1.0.1.g09896
Acanthocheilonema viteae
nAv.1.0.1.g09896
I
0.985
OESDEN_02943
Oesophagostomum dentatum
OESDEN_02943
I
0.985
L893_g29555
Steinernema glaseri
L893_g29555
I
0.985
TCNE_0001780601
Toxocara canis
TCNE_0001780601
I
0.985
nOo.2.0.1.g05901
Onchocerca ochengi
nOo.2.0.1.g05901
I
0.985
CRE15289
Caenorhabditis remanei
CRE15289
I
0.985
PPA20304
Pristionchus pacificus
PPA20304
I
0.985
LOAG_18352
Loa loa
LOAG_18352
I
0.985
TELCIR_01879
Teladorsagia circumcincta
TELCIR_01879
I
0.985
OFLC_0000776201
Onchocerca flexuosa
OFLC_0000776201
I
0.985
L892_g650
Steinernema scapterisci
L892_g650
I
0.985
CBN19233
Caenorhabditis brenneri
CBN19233
I
0.984
CJA13646
Caenorhabditis japonica
CJA13646
I
0.984
ASIM_0001589901
Anisakis simplex
ASIM_0001589901
I
0.981
DICVIV_11945
Dictyocaulus viviparus
DICVIV_11945
I
0.979
ACOC_0000732601
Angiostrongylus costaricensis
ACOC_0000732601
I
0.947
PTRK_0000510500
Parastrongyloides trichosuri
PTRK_0000510500
I
0.890
SPAL_0001436300
Strongyloides papillosus
SPAL_0001436300
I
0.890
SVE_0301400
Strongyloides venezuelensis
SVE_0301400
I
0.890
SSTP_0000831700
Strongyloides stercoralis
SSTP_0000831700
I
0.890
SVUK_0001012101
Strongylus vulgaris
SVUK_0001012101
I
0.885
BXY_1600300
Bursaphelenchus xylophilus
BXY_1600300
I
0.877
GPLIN_000268400
Globodera pallida
GPLIN_000268400
I
0.877
MhA1_Contig984.frz3.gene20
Meloidogyne hapla
MhA1_Contig984.frz3.gene20
I
0.877
SSTP_0000217700
Strongyloides stercoralis
SSTP_0000217700
I
0.864
SVE_1633700
Strongyloides venezuelensis
SVE_1633700
I
0.864
PTRK_0000775900
Parastrongyloides trichosuri
PTRK_0000775900
I
0.864
SPAL_0001157400
Strongyloides papillosus
SPAL_0001157400
I
0.864
L596_g27086
Steinernema carpocapsae
L596_g27086
I
0.862
L898_g4801
Steinernema monticolum
L898_g4801
I
0.860
L893_g6878
Steinernema glaseri
L893_g6878
I
0.860
L889_g29204
Steinernema feltiae
L889_g29204
I
0.860
DME_0000480501
Dracunculus medinensis
DME_0000480501
I
0.850
nOo.2.0.1.g04046
Onchocerca ochengi
nOo.2.0.1.g04046
I
0.849
NECAME_05125
Necator americanus
NECAME_05125
I
0.849
nAv.1.0.1.g01698
Acanthocheilonema viteae
nAv.1.0.1.g01698
I
0.849
NBR_0000170601
Nippostrongylus brasiliensis
NBR_0000170601
I
0.849
nDi.2.2.2.g02781
Dirofilaria immitis
nDi.2.2.2.g02781
I
0.849
nLs.2.1.2.g08709
Litomosoides sigmodontis
nLs.2.1.2.g08709
I
0.849
BTMF_0001198801
Brugia timori
BTMF_0001198801
I
0.849
CJA04720
Caenorhabditis japonica
CJA04720
I
0.849
TCLT_0000173501
Thelazia callipaeda
TCLT_0000173501
I
0.849
LOAG_05485
Loa loa
LOAG_05485
I
0.849
CBG19604
Caenorhabditis briggsae
CBG19604
I
0.849
Bm4894
Brugia malayi
Bm4894
I
0.849
WUBG_10752
Wuchereria bancrofti
WUBG_10752
I
0.849
Bm12053
Brugia malayi
Bm12053
I
0.849
OESDEN_17109
Oesophagostomum dentatum
OESDEN_17109
I
0.849
WBGene00248075
Onchocerca volvulus
WBGene00248075
I
0.849
HCOI01268300
Haemonchus contortus
HCOI01268300
I
0.849
OFLC_0001511801
Onchocerca flexuosa
OFLC_0001511801
I
0.849
Hba_14163
Heterorhabditis bacteriophora
Hba_14163
I
0.849
ANCCAN_12539
Ancylostoma caninum
ANCCAN_12539
I
0.849
GPUH_0000393501
Gongylonema pulchrum
GPUH_0000393501
I
0.849
CBN07936
Caenorhabditis brenneri
CBN07936
I
0.846
CBN20828
Caenorhabditis brenneri
CBN20828
I
0.846
CRE06667
Caenorhabditis remanei
CRE06667
I
0.846
nhr-88
Caenorhabditis elegans
WBGene00003678
I
0.846
ACAC_0001180201
Angiostrongylus cantonensis
ACAC_0001180201
I
0.845
snap_masked-nMf.1.1.scaf24311-processed-gene-0.3
Meloidogyne floridensis
snap_masked-nMf.1.1.scaf24311-processed-gene-0.3
I
0.844
Minc15420
Meloidogyne incognita
Minc15420
I
0.844
DME_0000960901
Dracunculus medinensis
DME_0000960901
I
0.843
L596_g25297
Steinernema carpocapsae
L596_g25297
I
0.835
L889_g8361
Steinernema feltiae
L889_g8361
I
0.835
L898_g10316
Steinernema monticolum
L898_g10316
I
0.835
scaffold51-EXSNAP2012.23
Pristionchus exspectatus
scaffold51-EXSNAP2012.23
I
0.830
PPA21285
Pristionchus pacificus
PPA21285
I
0.830
L892_g19201
Steinernema scapterisci
L892_g19201
I
0.824
ASIM_0001309901
Anisakis simplex
ASIM_0001309901
I
0.818
DME_0000742401
Dracunculus medinensis
DME_0000742401
I
0.808
HPLM_0001680701
Haemonchus placei
HPLM_0001680701
I
0.808
ANCCEY_03357
Ancylostoma ceylanicum
ANCCEY_03357
I
0.808
OESDEN_02652
Oesophagostomum dentatum
OESDEN_02652
I
0.808
DICVIV_02348
Dictyocaulus viviparus
DICVIV_02348
I
0.808
L596_g27130
Steinernema carpocapsae
L596_g27130
I
0.808
HPBE_0001043101
Heligmosomoides bakeri
HPBE_0001043101
I
0.808
HCOI00769300
Haemonchus contortus
HCOI00769300
I
0.808
HCOI01406200
Haemonchus contortus
HCOI01406200
I
0.808
ACAC_0000239001
Angiostrongylus cantonensis
ACAC_0000239001
I
0.808
CBG19594
Caenorhabditis briggsae
CBG19594
I
0.808
TELCIR_05080
Teladorsagia circumcincta
TELCIR_05080
I
0.808
TELCIR_07363
Teladorsagia circumcincta
TELCIR_07363
I
0.808
CBN31048
Caenorhabditis brenneri
CBN31048
I
0.808
CRE06661
Caenorhabditis remanei
CRE06661
I
0.808
NECAME_12696
Necator americanus
NECAME_12696
I
0.808
nhr-119
Caenorhabditis elegans
WBGene00003709
I
0.808
NBR_0001432001
Nippostrongylus brasiliensis
NBR_0001432001
I
0.808
ACOC_0001326501
Angiostrongylus costaricensis
ACOC_0001326501
I
0.808
Hba_14958
Heterorhabditis bacteriophora
Hba_14958
I
0.801
L889_g29246
Steinernema feltiae
L889_g29246
I
0.796
L889_g5777
Steinernema feltiae
L889_g5777
I
0.795
L898_g14928
Steinernema monticolum
L898_g14928
I
0.784
BXY_1595900
Bursaphelenchus xylophilus
BXY_1595900
I
0.784
EVEC_0000733201
Enterobius vermicularis
EVEC_0000733201
N
0.782
L893_g29388
Steinernema glaseri
L893_g29388
I
0.775
L596_g20569
Steinernema carpocapsae
L596_g20569
I
0.775
L898_g24498
Steinernema monticolum
L898_g24498
I
0.775
genemark-nMf.1.1.scaf00140-processed-gene-0.6
Meloidogyne floridensis
genemark-nMf.1.1.scaf00140-processed-gene-0.6
I
0.775
SVE_0137800
Strongyloides venezuelensis
SVE_0137800
I
0.770
SPAL_0000110800
Strongyloides papillosus
SPAL_0000110800
I
0.770
SSTP_0001234400
Strongyloides stercoralis
SSTP_0001234400
I
0.770
L596_g3812
Steinernema carpocapsae
L596_g3812
I
0.759
L893_g27196
Steinernema glaseri
L893_g27196
I
0.759
L889_g6303
Steinernema feltiae
L889_g6303
I
0.759
L898_g23965
Steinernema monticolum
L898_g23965
I
0.759
Ppa-nhr-3
Pristionchus pacificus
PPA28597
I
0.753
scaffold395-EXSNAP2012.23
Pristionchus exspectatus
scaffold395-EXSNAP2012.23
I
0.753
L892_g21738
Steinernema scapterisci
L892_g21738
I
0.746