GPLIN_000669000 (Globodera pallida)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 GPLIN_000669000 T308677_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
nhr-3
M00687_2.00 		Caenorhabditis elegans
NNHGDHYANN
NNTRDHCDNN		 PBM
Narasimhan et al.(2015)
pTH9163 		0.984 0.771
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GPLIN_000669000 Nuclear receptor 238 307

Links

Other Nuclear receptor family TFs
Other Globodera pallida TFs

124 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Minc01725 Meloidogyne incognita Minc01725 I 0.993
Minc13525 Meloidogyne incognita Minc13525 I 0.993
maker-nMf.1.1.scaf07948-snap-gene-0.4 Meloidogyne floridensis maker-nMf.1.1.scaf07948-snap-gene-0.4 I 0.993
MhA1_Contig217.frz3.gene7 Meloidogyne hapla MhA1_Contig217.frz3.gene7 I 0.993
snap_masked-nMf.1.1.scaf18837-processed-gene-0.2 Meloidogyne floridensis snap_masked-nMf.1.1.scaf18837-processed-gene-0.2 I 0.993
BXY_0011200 Bursaphelenchus xylophilus BXY_0011200 I 0.989
PPA20304 Pristionchus pacificus PPA20304 I 0.986
L596_g25666 Steinernema carpocapsae L596_g25666 I 0.986
L892_g650 Steinernema scapterisci L892_g650 I 0.986
TCLT_0000079701 Thelazia callipaeda TCLT_0000079701 I 0.985
WUBG_08518 Wuchereria bancrofti WUBG_08518 I 0.984
Bm14724 Brugia malayi Bm14724 I 0.984
CBG07552 Caenorhabditis briggsae CBG07552 I 0.984
CBN19233 Caenorhabditis brenneri CBN19233 I 0.984
CRE15289 Caenorhabditis remanei CRE15289 I 0.984
LOAG_18352 Loa loa LOAG_18352 I 0.984
nhr-3 Caenorhabditis elegans WBGene00003602 D 0.984
WBGene00241910 Onchocerca volvulus WBGene00241910 I 0.984
ANCCAN_18459 Ancylostoma caninum ANCCAN_18459 I 0.984
ASU_10946 Ascaris suum ASU_10946 I 0.984
BTMF_0000273701 Brugia timori BTMF_0000273701 I 0.984
HCOI02077900 Haemonchus contortus HCOI02077900 I 0.984
L893_g29555 Steinernema glaseri L893_g29555 I 0.984
nAv.1.0.1.g09896 Acanthocheilonema viteae nAv.1.0.1.g09896 I 0.984
nDi.2.2.2.g05078 Dirofilaria immitis nDi.2.2.2.g05078 I 0.984
NECAME_04545 Necator americanus NECAME_04545 I 0.984
nLs.2.1.2.g05858 Litomosoides sigmodontis nLs.2.1.2.g05858 I 0.984
nOo.2.0.1.g05901 Onchocerca ochengi nOo.2.0.1.g05901 I 0.984
OESDEN_02943 Oesophagostomum dentatum OESDEN_02943 I 0.984
OFLC_0000776201 Onchocerca flexuosa OFLC_0000776201 I 0.984
SMUV_0000428701 Syphacia muris SMUV_0000428701 I 0.984
TCNE_0001780601 Toxocara canis TCNE_0001780601 I 0.984
TELCIR_01879 Teladorsagia circumcincta TELCIR_01879 I 0.984
CJA13646 Caenorhabditis japonica CJA13646 I 0.983
ASIM_0001589901 Anisakis simplex ASIM_0001589901 I 0.981
DICVIV_11945 Dictyocaulus viviparus DICVIV_11945 I 0.978
ACOC_0000732601 Angiostrongylus costaricensis ACOC_0000732601 I 0.949
PTRK_0000510500 Parastrongyloides trichosuri PTRK_0000510500 I 0.887
SPAL_0001436300 Strongyloides papillosus SPAL_0001436300 I 0.887
SSTP_0000831700 Strongyloides stercoralis SSTP_0000831700 I 0.887
SVE_0301400 Strongyloides venezuelensis SVE_0301400 I 0.887
SVUK_0001012101 Strongylus vulgaris SVUK_0001012101 I 0.881
BXY_1600300 Bursaphelenchus xylophilus BXY_1600300 I 0.871
GPLIN_000268400 Globodera pallida GPLIN_000268400 I 0.871
MhA1_Contig984.frz3.gene20 Meloidogyne hapla MhA1_Contig984.frz3.gene20 I 0.871
L596_g27086 Steinernema carpocapsae L596_g27086 I 0.864
L889_g29204 Steinernema feltiae L889_g29204 I 0.862
L893_g6878 Steinernema glaseri L893_g6878 I 0.862
L898_g4801 Steinernema monticolum L898_g4801 I 0.862
PTRK_0000775900 Parastrongyloides trichosuri PTRK_0000775900 I 0.860
SPAL_0001157400 Strongyloides papillosus SPAL_0001157400 I 0.860
SSTP_0000217700 Strongyloides stercoralis SSTP_0000217700 I 0.860
SVE_1633700 Strongyloides venezuelensis SVE_1633700 I 0.860
WUBG_10752 Wuchereria bancrofti WUBG_10752 I 0.851
Bm12053 Brugia malayi Bm12053 I 0.851
Bm4894 Brugia malayi Bm4894 I 0.851
CBG19604 Caenorhabditis briggsae CBG19604 I 0.851
CJA04720 Caenorhabditis japonica CJA04720 I 0.851
LOAG_05485 Loa loa LOAG_05485 I 0.851
WBGene00248075 Onchocerca volvulus WBGene00248075 I 0.851
BTMF_0001198801 Brugia timori BTMF_0001198801 I 0.851
GPUH_0000393501 Gongylonema pulchrum GPUH_0000393501 I 0.851
nAv.1.0.1.g01698 Acanthocheilonema viteae nAv.1.0.1.g01698 I 0.851
nDi.2.2.2.g02781 Dirofilaria immitis nDi.2.2.2.g02781 I 0.851
nLs.2.1.2.g08709 Litomosoides sigmodontis nLs.2.1.2.g08709 I 0.851
nOo.2.0.1.g04046 Onchocerca ochengi nOo.2.0.1.g04046 I 0.851
OFLC_0001511801 Onchocerca flexuosa OFLC_0001511801 I 0.851
TCLT_0000173501 Thelazia callipaeda TCLT_0000173501 I 0.851
CBN07936 Caenorhabditis brenneri CBN07936 I 0.849
CBN20828 Caenorhabditis brenneri CBN20828 I 0.849
CRE06667 Caenorhabditis remanei CRE06667 I 0.849
nhr-88 Caenorhabditis elegans WBGene00003678 I 0.849
Minc15420 Meloidogyne incognita Minc15420 I 0.846
snap_masked-nMf.1.1.scaf24311-processed-gene-0.3 Meloidogyne floridensis snap_masked-nMf.1.1.scaf24311-processed-gene-0.3 I 0.846
DME_0000480501 Dracunculus medinensis DME_0000480501 I 0.845
DME_0000960901 Dracunculus medinensis DME_0000960901 I 0.845
ANCCAN_12539 Ancylostoma caninum ANCCAN_12539 I 0.844
Hba_14163 Heterorhabditis bacteriophora Hba_14163 I 0.844
HCOI01268300 Haemonchus contortus HCOI01268300 I 0.844
NBR_0000170601 Nippostrongylus brasiliensis NBR_0000170601 I 0.844
NECAME_05125 Necator americanus NECAME_05125 I 0.844
OESDEN_17109 Oesophagostomum dentatum OESDEN_17109 I 0.844
ACAC_0001180201 Angiostrongylus cantonensis ACAC_0001180201 I 0.840
PPA21285 Pristionchus pacificus PPA21285 I 0.833
scaffold51-EXSNAP2012.23 Pristionchus exspectatus scaffold51-EXSNAP2012.23 I 0.833
L596_g25297 Steinernema carpocapsae L596_g25297 I 0.827
L889_g8361 Steinernema feltiae L889_g8361 I 0.827
L892_g19201 Steinernema scapterisci L892_g19201 I 0.827
L898_g10316 Steinernema monticolum L898_g10316 I 0.827
L596_g27130 Steinernema carpocapsae L596_g27130 I 0.811
L889_g29246 Steinernema feltiae L889_g29246 I 0.811
ASIM_0001309901 Anisakis simplex ASIM_0001309901 I 0.810
CBG19594 Caenorhabditis briggsae CBG19594 I 0.800
CBN31048 Caenorhabditis brenneri CBN31048 I 0.800
CRE06661 Caenorhabditis remanei CRE06661 I 0.800
DME_0000742401 Dracunculus medinensis DME_0000742401 I 0.800
nhr-119 Caenorhabditis elegans WBGene00003709 I 0.799
ACAC_0000239001 Angiostrongylus cantonensis ACAC_0000239001 I 0.799
ACOC_0001326501 Angiostrongylus costaricensis ACOC_0001326501 I 0.799
ANCCEY_03357 Ancylostoma ceylanicum ANCCEY_03357 I 0.799
DICVIV_02348 Dictyocaulus viviparus DICVIV_02348 I 0.799
HCOI00769300 Haemonchus contortus HCOI00769300 I 0.799
HCOI01406200 Haemonchus contortus HCOI01406200 I 0.799
HPBE_0001043101 Heligmosomoides bakeri HPBE_0001043101 I 0.799
HPLM_0001680701 Haemonchus placei HPLM_0001680701 I 0.799
NBR_0001432001 Nippostrongylus brasiliensis NBR_0001432001 I 0.799
NECAME_12696 Necator americanus NECAME_12696 I 0.799
OESDEN_02652 Oesophagostomum dentatum OESDEN_02652 I 0.799
TELCIR_05080 Teladorsagia circumcincta TELCIR_05080 I 0.799
TELCIR_07363 Teladorsagia circumcincta TELCIR_07363 I 0.799
Hba_14958 Heterorhabditis bacteriophora Hba_14958 I 0.792
L889_g5777 Steinernema feltiae L889_g5777 I 0.789
BXY_1595900 Bursaphelenchus xylophilus BXY_1595900 I 0.787
L898_g14928 Steinernema monticolum L898_g14928 I 0.787
EVEC_0000733201 Enterobius vermicularis EVEC_0000733201 N 0.773
L596_g20569 Steinernema carpocapsae L596_g20569 I 0.768
L893_g29388 Steinernema glaseri L893_g29388 I 0.768
L898_g24498 Steinernema monticolum L898_g24498 I 0.768
genemark-nMf.1.1.scaf00140-processed-gene-0.6 Meloidogyne floridensis genemark-nMf.1.1.scaf00140-processed-gene-0.6 I 0.765
SPAL_0000110800 Strongyloides papillosus SPAL_0000110800 I 0.763
SSTP_0001234400 Strongyloides stercoralis SSTP_0001234400 I 0.763
SVE_0137800 Strongyloides venezuelensis SVE_0137800 I 0.763
Ppa-nhr-3 Pristionchus pacificus PPA28597 I 0.753
scaffold395-EXSNAP2012.23 Pristionchus exspectatus scaffold395-EXSNAP2012.23 I 0.753