fgenesh2_kg.1__2281__AT1G20910.1 (Arabidopsis lyrata)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01388 (ARID) IPR001606 fgenesh2_kg.1__2281__AT1G20910.1 T014938_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARID6
M06694_2.00 		Arabidopsis thaliana
HAATTRAWTTN
NAAWTYAATTD		 Dap-seq
OMalley et al.(2016)
AT1G20910_col_a 		0.785 0.976
ARID3
M06695_2.00 		Arabidopsis thaliana
AAWWHNAAATYAAWW
WWTTRATTTNDWWTT		 Dap-seq
OMalley et al.(2016)
AT2G17410_col_a 		0.591 0.718
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.1__2281__AT1G20910.1 ARID/BRIGHT 110 195

Links

Other ARID/BRIGHT family TFs
Other Arabidopsis lyrata TFs

156 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00007p00170710 Amborella trichopoda AMTR_s00007p00170710 I
SapurV1A.1821s0030 Salix purpurea SapurV1A.1821s0030 I
SapurV1A.1185s0010 Salix purpurea SapurV1A.1185s0010 I
Eucgr.E02743 Eucalyptus grandis Eucgr.E02743 I
Aquca_081_00012 Aquilegia coerulea Aquca_081_00012 I
Aquca_004_00748 Aquilegia coerulea Aquca_004_00748 I
Cucsa.213230 Cucumis sativus Cucsa.213230 I
Cla019977 Citrullus lanatus Cla019977 I
VIT_08s0040g01240 Vitis vinifera VIT_08s0040g01240 I
TRIUR3_31897 Triticum urartu TRIUR3_31897 I
Traes_4DL_7BD3165FB Triticum aestivum Traes_4DL_7BD3165FB I
Traes_4BL_A2B32FCEE Triticum aestivum Traes_4BL_A2B32FCEE I
Traes_4AS_DD16F89E7 Triticum aestivum Traes_4AS_DD16F89E7 I
MLOC_66385 Hordeum vulgare MLOC_66385 I
F775_10096 Aegilops tauschii F775_10096 I
AMTR_s00002p00019320 Amborella trichopoda AMTR_s00002p00019320 I
Cagra.0578s0007 Capsella grandiflora Cagra.0578s0007 N
evm.TU.supercontig_92.83 Carica papaya evm.TU.supercontig_92.83 N
Bo3g035410 Brassica oleracea Bo3g035410 N
Eucgr.A02230 Eucalyptus grandis Eucgr.A02230 N
Ciclev10012626m.g Citrus clementina Ciclev10012626m.g N
Carubv10023903m.g Capsella rubella Carubv10023903m.g N
Carubv10017947m.g Capsella rubella Carubv10017947m.g N
Cagra.1642s0077 Capsella grandiflora Cagra.1642s0077 N
Gorai.007G352300 Gossypium raimondii Gorai.007G352300 N
Bostr.9345s0019 Boechera stricta Bostr.9345s0019 N
Bostr.20505s0075 Boechera stricta Bostr.20505s0075 N
Bo4g012960 Brassica oleracea Bo4g012960 N
Bo4g112750 Brassica oleracea Bo4g112750 N
mgf009382m Mimulus guttatus mgf009382m N
Bo4g190700 Brassica oleracea Bo4g190700 N
gene14814-v1.0-hybrid Fragaria vesca gene14814-v1.0-hybrid N
cassava7163.valid.m1 Manihot esculenta cassava7163.valid.m1 N
Lus10018020.g Linum usitatissimum Lus10018020.g N
Lus10042017.g Linum usitatissimum Lus10042017.g N
MDP0000138102 Malus domestica MDP0000138102 N
MDP0000213892 Malus domestica MDP0000213892 N
orange1.1g026479m.g Citrus sinensis orange1.1g026479m.g N
Pavir.J02699 Panicum virgatum Pavir.J02699 N
Pavir.J24868 Panicum virgatum Pavir.J24868 N
SapurV1A.0159s0020 Salix purpurea SapurV1A.0159s0020 N
SapurV1A.0189s0140 Salix purpurea SapurV1A.0189s0140 N
BHLH106 Arabidopsis thaliana AT2G41130 N
Thhalv10006410m.g Eutrema salsugineum Thhalv10006410m.g N
Thhalv10017546m.g Eutrema salsugineum Thhalv10017546m.g N
PK23387.1 Cannabis sativa PK23387.1 N
chr1.CM0816.330.nc Lotus japonicus chr1.CM0816.330.nc N
PRUPE_ppa011532mg Prunus persica PRUPE_ppa011532mg N
GLYMA19G30910 Glycine max GLYMA19G30910 N
GRMZM2G027068 Zea mays GRMZM2G027068 N
GSMUA_Achr8G23980_001 Musa acuminata GSMUA_Achr8G23980_001 N
LPERR03G32730 Leersia perrieri LPERR03G32730 N
GLYMA02G23590 Glycine max GLYMA02G23590 N
OGLUM03G38250 Oryza glumaepatula OGLUM03G38250 N
OMERI03G35360 Oryza meridionalis OMERI03G35360 N
ONIVA03G40100 Oryza nivara ONIVA03G40100 N
OPUNC03G35590 Oryza punctata OPUNC03G35590 N
ORGLA03G0352000 Oryza glaberrima ORGLA03G0352000 N
ORUFI03G40090 Oryza rufipogon ORUFI03G40090 N
OS03G0811400 Oryza sativa OS03G0811400 N
PGSC0003DMG400008378 Solanum tuberosum PGSC0003DMG400008378 N
POPTR_0006s03550 Populus trichocarpa POPTR_0006s03550 N
POPTR_0016s03460 Populus trichocarpa POPTR_0016s03460 N
GLYMA03G28150 Glycine max GLYMA03G28150 N
Sb01g003830 Sorghum bicolor Sb01g003830 N
scaffold_402920.1 Arabidopsis lyrata scaffold_402920.1 N
Solyc10g078380.1 Solanum lycopersicum Solyc10g078380.1 N
TCM_024016 Theobroma cacao TCM_024016 N
BRADI2G07050 Brachypodium distachyon BRADI2G07050 N
BRADI1G04280 Brachypodium distachyon BRADI1G04280 N
Traes_5BL_CBFAD4B59 Triticum aestivum Traes_5BL_CBFAD4B59 N
Bra016951 Brassica rapa Bra016951 N
Bra014672 Brassica rapa Bra014672 N
Ca_07159 Cicer arietinum Ca_07159 N
Cla017413 Citrullus lanatus Cla017413 N
Bra004599 Brassica rapa Bra004599 N
Pm025589 Prunus mume Pm025589 N
30180.m001071 Ricinus communis 30180.m001071 N