Carubv10001406m.g (Capsella rubella)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Carubv10001406m.g T022814_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NGA4
M06707_2.00 		Arabidopsis thaliana
NHHBDYCAGGTRNHWH
DWDNYACCTGRHVDDN		 Dap-seq
OMalley et al.(2016)
NGA4_col_a 		0.784 0.784
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10001406m B3 38 141

Links

Other B3 family TFs
Other Capsella rubella TFs

13 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NGA4 Arabidopsis thaliana AT4G01500 D 0.817
Bo00853s090 Brassica oleracea Bo00853s090 I 0.789
Bra008552 Brassica rapa Bra008552 I 0.779
OB04G29740 Oryza brachyantha OB04G29740 I 0.736
OPUNC04G20430 Oryza punctata OPUNC04G20430 I 0.743
NGA4 Arabidopsis lyrata scaffold_604140.1 I 0.848
Traes_2DL_896E50180 Triticum aestivum Traes_2DL_896E50180 I 0.857
Bostr.7365s0004 Boechera stricta Bostr.7365s0004 I 0.868
Cagra.23502s0003 Capsella grandiflora Cagra.23502s0003 I 0.990
SapurV1A.0666s0090 Salix purpurea SapurV1A.0666s0090 I 0.729
Thhalv10028783m.g Eutrema salsugineum Thhalv10028783m.g I 0.779
Bra037417 Brassica rapa Bra037417 N 0.711
Bostr.5325s0023 Boechera stricta Bostr.5325s0023 N 0.711