Alligator_sinensis_CCG012594.1 (Alligator sinensis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Alligator_sinensis_CCG012594.1 T046659_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Olig3
M01745_2.00 		Mus musculus
NWAHHATANNN
NNNTATDDTWN		 PBM
Weirauch et al.(2014)
pTH5164 		0.914 1.000
OLIG3
M02798_2.00 		Homo sapiens
AMCATATGBY
RVCATATGKT		 SELEX
Jolma et al.(2013)
OLIG3_1 		0.914 1.000
OLIG3
M04175_2.00 		Homo sapiens
RMCATATGSY
RSCATATGKY		 SELEX
Yin et al.(2017)
OLIG3_FL_HT-SELEX 		0.914 1.000
OLIG3
M04171_2.00 		Homo sapiens
RMCATATGSY
RSCATATGKY		 SELEX
Yin et al.(2017)
OLIG3_eDBD_HT-SELEX_1 		0.914 1.000
OLIG3
M04172_2.00 		Homo sapiens
AACAKMTGBT
AVCAKMTGTT		 SELEX
Yin et al.(2017)
OLIG3_eDBD_HT-SELEX_2 		0.914 1.000
OLIG3
M04176_2.00 		Homo sapiens
RMCATATGGY
RCCATATGKY		 SELEX
Yin et al.(2017)
OLIG3_FL_Methyl-HT-SELEX 		0.914 1.000
OLIG3
M04173_2.00 		Homo sapiens
RMCATATGSY
RSCATATGKY		 SELEX
Yin et al.(2017)
OLIG3_eDBD_Methyl-HT-SELEX_1 		0.914 1.000
OLIG3
M04174_2.00 		Homo sapiens
VACAKMTGKY
RMCAKMTGTB		 SELEX
Yin et al.(2017)
OLIG3_eDBD_Methyl-HT-SELEX_2 		0.914 1.000
OLIG2
M02812_2.00 		Homo sapiens
AMCATATGBY
RVCATATGKT		 SELEX
Jolma et al.(2013)
OLIG2_1 		0.894 0.964
OLIG2
M02813_2.00 		Homo sapiens
AMCATATGBY
RVCATATGKT		 SELEX
Jolma et al.(2013)
OLIG2_2 		0.894 0.964
OLIG2
M04223_2.00 		Homo sapiens
AACAKMTGTB
VACAKMTGTT		 SELEX
Yin et al.(2017)
OLIG2_eDBD_HT-SELEX_1 		0.894 0.964
OLIG2
M04224_2.00 		Homo sapiens
AMCATATGKY
RMCATATGKT		 SELEX
Yin et al.(2017)
OLIG2_eDBD_HT-SELEX_2 		0.894 0.964
OLIG2
M08742_2.00 		Homo sapiens
NDNVHNRVVRVCAGMTGK
MCAKCTGBYBBYNDBNHN		 Misc
Kulakovskiy et al.(2013)
OLIG2_HUMAN.H11MO.0.B 		0.894 0.964
Olig2
M08771_2.00 		Mus musculus
NDNVHNRVVRVCAGMTGK
MCAKCTGBYBBYNDBNHN		 Misc
Kulakovskiy et al.(2013)
OLIG2_MOUSE.H11MO.0.A 		0.894 0.964
Olig2
M09477_2.00 		Mus musculus
RVCAKMTGKH
DMCAKMTGBY		 Misc
Heinz et al.(2010)
Neuron-Olig2_GSE30882 		0.894 0.964
OLIG2
M04225_2.00 		Homo sapiens
AACAKMTGKB
VMCAKMTGTT		 SELEX
Yin et al.(2017)
OLIG2_eDBD_Methyl-HT-SELEX_1 		0.894 0.964
OLIG2
M04226_2.00 		Homo sapiens
AMCATATGKT
AMCATATGKT		 SELEX
Yin et al.(2017)
OLIG2_eDBD_Methyl-HT-SELEX_2 		0.894 0.964
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG012594.1 bHLH 87 141

Links

Other bHLH family TFs
Other Alligator sinensis TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PATZ1 Homo sapiens ENSG00000100105 D
Patz1 Mus musculus ENSMUSG00000020453 I
ENSAPLG00000003934 Anas platyrhynchos ENSAPLG00000003934 I
ENSNLEG00000004385 Nomascus leucogenys ENSNLEG00000004385 I
PATZ1 Ornithorhynchus anatinus ENSOANG00000014654 I
PATZ1 Otolemur garnettii ENSOGAG00000027905 I
ENSPPYG00000011732 Pongo abelii ENSPPYG00000011732 I
ENSPSIG00000011562 Pelodiscus sinensis ENSPSIG00000011562 I
ENSPSIG00000016553 Pelodiscus sinensis ENSPSIG00000016553 I
PATZ1 Pan troglodytes ENSPTRG00000014268 I
PATZ1 Pteropus vampyrus ENSPVAG00000001749 I
ENSSTOG00000020707 Ictidomys tridecemlineatus ENSSTOG00000020707 I
PATZ1 Tursiops truncatus ENSTTRG00000010279 I
Aan_R008287 Calypte anna Aan_R008287 I
Afo_R009044 Aptenodytes forsteri Afo_R009044 I
Brh_R010628 Buceros rhinoceros Brh_R010628 I
ENSP00000266269-D1 Bos grunniens ENSP00000266269-D1 I
ENSP00000266269 Macaca fascicularis ENSP00000266269 I
Gfo_R010882 Geospiza fortis Gfo_R010882 I
Myotis_brandtii_PATZ1_10027570 Myotis brandtii Myotis_brandtii_PATZ1_10027570 I
Pvit_03702 Pogona vitticeps Pvit_03702 I
Tal_R008892 Tyto alba Tal_R008892 I
PATZ1 Gallus gallus ENSGALG00000006934 I
ENSAMEG00000007074 Ailuropoda melanoleuca ENSAMEG00000007074 I
PATZ1 Bos taurus ENSBTAG00000005478 I
PATZ1 Canis familiaris ENSCAFG00000013087 I
PATZ1 Cavia porcellus ENSCPOG00000010787 I
PATZ1 Dasypus novemcinctus ENSDNOG00000003183 I
ENSFALG00000007450 Ficedula albicollis ENSFALG00000007450 I
PATZ1 Gorilla gorilla ENSGGOG00000017171 I
ENSLACG00000016839 Latimeria chalumnae ENSLACG00000016839 I
ENSMEUG00000016293 Macropus eugenii ENSMEUG00000016293 I
PATZ1 Macaca mulatta ENSMMUG00000013911 I
PATZ1 Myotis lucifugus ENSMLUG00000009942 I
PATZ1 Microcebus murinus ENSMICG00000005430 I
PATZ1 Meleagris gallopavo ENSMGAG00000008439 I
PATZ1 Loxodonta africana ENSLAFG00000002317 I
PATZ1 Sus scrofa ENSSSCG00000010027 N
ENSMPUG00000012814 Mustela putorius furo ENSMPUG00000012814 N
PATZ1 Taeniopygia guttata ENSTGUG00000009749 N
PATZ1 Felis catus ENSFCAG00000030253 N
PATZ1 Ochotona princeps ENSOPRG00000002286 N
PATZ1 Equus caballus ENSECAG00000025030 N
Alligator_sinensis_CCG014139.1 Alligator sinensis Alligator_sinensis_CCG014139.1 N
Patz1 Rattus norvegicus ENSRNOG00000018709 N
Cmyd_10005165 Chelonia mydas Cmyd_10005165 N
ENSCSAG00000008746 Chlorocebus sabaeus ENSCSAG00000008746 N
PATZ1 Oryctolagus cuniculus ENSOCUG00000002323 N
PATZ1 Callithrix jacchus ENSCJAG00000010978 N
ENSOARG00000010061 Ovis aries ENSOARG00000010061 N
Ogr03452 Ophisaurus gracilis Ogr03452 N