Bra004550 (Brassica rapa)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00170 (bZIP_1) IPR011616 Bra004550 T057405_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GBF3
M01779_2.00 		Arabidopsis thaliana
NBMCASSTVD
HBASSTGKVN		 PBM
Weirauch et al.(2014)
pTH7328 		0.883 0.969
GBF3
M06770_2.00 		Arabidopsis thaliana
DNHDNHSACGTGKMD
HKMCACGTSDNHDNH		 Dap-seq
OMalley et al.(2016)
GBF3_colamp 		0.883 0.969
GBF3
M06771_2.00 		Arabidopsis thaliana
DDWKVYSACGTGGCA
TGCCACGTSRBMWHH		 Dap-seq
OMalley et al.(2016)
GBF3_col 		0.883 0.969
PK09653.1
M01156_2.00 		Cannabis sativa
NNMCASVNNN
NNNBSTGKNN		 PBM
Lambert et al.(2019)
pTH10114 		0.868 0.766
Q40645_ORYSA
M10050_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$OSBZ8_Q6 		0.854 0.734
Q41109_PHAVU
M10078_2.00 		Phaseolus vulgaris Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ROM_Q2 		0.854 0.781
GBF2
M01781_2.00 		Arabidopsis thaliana
BMCASSNNN
NNNSSTGKV		 PBM
Weirauch et al.(2014)
pTH7258 		0.834 0.719
TAF1_TOBAC
M10079_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TAF1_01 		0.820 0.734
TAF1_TOBAC
M10080_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TAF1_Q2 		0.820 0.734
CPRF1_PETCR
M10066_2.00 		Petroselinum crispum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CPRF1_01 		0.807 0.688
CPRF1_PETCR
M10067_2.00 		Petroselinum crispum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CPRF1_Q2 		0.807 0.688
CPRF1_PETCR
M10068_2.00 		Petroselinum crispum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CPRF_Q2 		0.807 0.688
GBF1
M01783_2.00 		Arabidopsis thaliana
HBACGTGKMN
NKMCACGTVD		 PBM
Weirauch et al.(2014)
pTH7259 		0.800 0.609
GBF1
M09913_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GBF1_01 		0.800 0.609
GBF1
M09914_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GBF1F_Q2 		0.800 0.609
GBF1
M09915_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GBF1_Q2_01 		0.800 0.609
GBF1
M09916_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GBF1_Q2 		0.800 0.609
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra004550.1-P bZIP 261 334

Links

Other bZIP family TFs
Other Brassica rapa TFs

178 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GBF3 Arabidopsis thaliana AT2G46270 D 0.883
GBF2 Arabidopsis thaliana AT4G01120 D 0.834
GBF1 Arabidopsis thaliana AT4G36730 D 0.800
Q40645_ORYSA Oryza sativa Q40645_ORYSA D 0.854
CPRF1_PETCR Petroselinum crispum CPRF1_PETCR D 0.807
Q41109_PHAVU Phaseolus vulgaris Q41109_PHAVU D 0.854
TAF1_TOBAC Nicotiana tabacum TAF1_TOBAC D 0.820
PK09653.1 Cannabis sativa PK09653.1 D 0.868
GBF2 Arabidopsis lyrata Al_scaffold_0006_3899 I 0.830
AMTR_s00048p00108400 Amborella trichopoda AMTR_s00048p00108400 I 0.792
BGIOSGA001085 Oryza indica BGIOSGA001085 I 0.854
BGIOSGA020389 Oryza indica BGIOSGA020389 I 0.837
BGIOSGA025382 Oryza indica BGIOSGA025382 I 0.794
Bo1g005460 Brassica oleracea Bo1g005460 I 0.813
Bo3g039150 Brassica oleracea Bo3g039150 I 0.855
Bo4g010410 Brassica oleracea Bo4g010410 I 0.883
Bo4g038560 Brassica oleracea Bo4g038560 I 0.785
Bo9g003700 Brassica oleracea Bo9g003700 I 0.831
Bra010572 Brassica rapa Bra010572 I 0.813
Bra011701 Brassica rapa Bra011701 I 0.813
Bra037382 Brassica rapa Bra037382 I 0.831
BRADI1G54180 Brachypodium distachyon BRADI1G54180 I 0.794
BRADI2G15940 Brachypodium distachyon BRADI2G15940 I 0.848
BRADI2G45567 Brachypodium distachyon BRADI2G45567 I 0.854
F775_07803 Aegilops tauschii F775_07803 I 0.851
GBF3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4002338 I 0.883
GLYMA03G41590 Glycine max GLYMA03G41590 I 0.835
GLYMA07G06620 Glycine max GLYMA07G06620 I 0.852
GLYMA08G34280 Glycine max GLYMA08G34280 I 0.804
GLYMA16G03190 Glycine max GLYMA16G03190 I 0.854
GLYMA16G15810 Glycine max GLYMA16G15810 I 0.808
GLYMA19G44190 Glycine max GLYMA19G44190 I 0.835
GRMZM2G011932 Zea mays GRMZM2G011932 I 0.837
GRMZM2G095078 Zea mays GRMZM2G095078 I 0.794
GRMZM2G117851 Zea mays GRMZM2G117851 I 0.854
GRMZM2G160136 Zea mays GRMZM2G160136 I 0.837
GRMZM2G171370 Zea mays GRMZM2G171370 I 0.794
GRMZM2G358701 Zea mays GRMZM2G358701 I 0.837
GRMZM5G848942 Zea mays GRMZM5G848942 I 0.837
GSMUA_Achr1G05050_001 Musa acuminata GSMUA_Achr1G05050_001 I 0.808
GSMUA_Achr5G14150_001 Musa acuminata GSMUA_Achr5G14150_001 I 0.783
GSMUA_Achr6G32000_001 Musa acuminata GSMUA_Achr6G32000_001 I 0.821
GSMUA_Achr9G05310_001 Musa acuminata GSMUA_Achr9G05310_001 I 0.829
LPERR01G21580 Leersia perrieri LPERR01G21580 I 0.854
LPERR05G21930 Leersia perrieri LPERR05G21930 I 0.854
LPERR07G06120 Leersia perrieri LPERR07G06120 I 0.794
MLOC_6711 Hordeum vulgare MLOC_6711 I 0.851
MTR_7g116890 Medicago truncatula MTR_7g116890 I 0.821
MTR_8g070820 Medicago truncatula MTR_8g070820 I 0.811
OB01G34490 Oryza brachyantha OB01G34490 I 0.854
OB05G33790 Oryza brachyantha OB05G33790 I 0.854
OB07G15280 Oryza brachyantha OB07G15280 I 0.794
OBART01G25300 Oryza barthii OBART01G25300 I 0.854
OBART05G26280 Oryza barthii OBART05G26280 I 0.854
OBART07G07070 Oryza barthii OBART07G07070 I 0.794
OGLUM01G29060 Oryza glumaepatula OGLUM01G29060 I 0.854
OGLUM05G27920 Oryza glumaepatula OGLUM05G27920 I 0.854
OGLUM07G06770 Oryza glumaepatula OGLUM07G06770 I 0.794
OLONG_003667 Oryza longistaminata OLONG_003667 I 0.854
OLONG_021599 Oryza longistaminata OLONG_021599 I 0.794
OLONG_022047 Oryza longistaminata OLONG_022047 I 0.854
OMERI01G23000 Oryza meridionalis OMERI01G23000 I 0.854
OMERI03G30340 Oryza meridionalis OMERI03G30340 I 0.854
OMERI07G05820 Oryza meridionalis OMERI07G05820 I 0.794
ONIVA01G28540 Oryza nivara ONIVA01G28540 I 0.854
ONIVA05G28290 Oryza nivara ONIVA05G28290 I 0.837
ONIVA07G05320 Oryza nivara ONIVA07G05320 I 0.794
OPUNC01G25140 Oryza punctata OPUNC01G25140 I 0.854
OPUNC02G01690 Oryza punctata OPUNC02G01690 I 0.794
OPUNC05G23850 Oryza punctata OPUNC05G23850 I 0.837
OPUNC07G06790 Oryza punctata OPUNC07G06790 I 0.794
ORGLA01G0206000 Oryza glaberrima ORGLA01G0206000 I 0.854
ORGLA05G0227800 Oryza glaberrima ORGLA05G0227800 I 0.854
ORUFI01G28110 Oryza rufipogon ORUFI01G28110 I 0.854
ORUFI05G28170 Oryza rufipogon ORUFI05G28170 I 0.854
ORUFI07G07050 Oryza rufipogon ORUFI07G07050 I 0.794
OS01G0658900 Oryza sativa OS01G0658900 I 0.854
OS05G0569300 Oryza sativa OS05G0569300 I 0.854
OS07G0209800 Oryza sativa OS07G0209800 I 0.794
PGSC0003DMG400000088 Solanum tuberosum PGSC0003DMG400000088 I 0.817
PGSC0003DMG400012660 Solanum tuberosum PGSC0003DMG400012660 I 0.789
PGSC0003DMG400033876 Solanum tuberosum PGSC0003DMG400033876 I 0.836
POPTR_0002s16870 Populus trichocarpa POPTR_0002s16870 I 0.848
POPTR_0005s12750 Populus trichocarpa POPTR_0005s12750 I 0.784
POPTR_0007s12460 Populus trichocarpa POPTR_0007s12460 I 0.784
POPTR_0014s08990 Populus trichocarpa POPTR_0014s08990 I 0.814
PRUPE_ppa006173mg Prunus persica PRUPE_ppa006173mg I 0.838
PRUPE_ppa020524mg Prunus persica PRUPE_ppa020524mg I 0.806
Sb02g006350 Sorghum bicolor Sb02g006350 I 0.794
Sb03g030050 Sorghum bicolor Sb03g030050 I 0.852
Sb09g028990 Sorghum bicolor Sb09g028990 I 0.854
GBF1 Arabidopsis lyrata scaffold_700433.1 I 0.800
SELMODRAFT_125734 Selaginella moellendorffii SELMODRAFT_125734 I 0.787
SELMODRAFT_129391 Selaginella moellendorffii SELMODRAFT_129391 I 0.787
SELMODRAFT_135978 Selaginella moellendorffii SELMODRAFT_135978 I 0.803
Si001929m.g Setaria italica Si001929m.g I 0.854
Si022388m.g Setaria italica Si022388m.g I 0.854
Si030123m.g Setaria italica Si030123m.g I 0.794
Si039367m.g Setaria italica Si039367m.g I 0.784
Solyc01g095460.2 Solanum lycopersicum Solyc01g095460.2 I 0.817
Solyc02g062950.2 Solanum lycopersicum Solyc02g062950.2 I 0.785
Solyc02g085610.2 Solanum lycopersicum Solyc02g085610.2 I 0.789
Solyc05g050220.2 Solanum lycopersicum Solyc05g050220.2 I 0.836
TCM_005210 Theobroma cacao TCM_005210 I 0.852
Traes_1AL_F18EC96DF Triticum aestivum Traes_1AL_F18EC96DF I 0.851
Traes_1BL_C5FEAF06E Triticum aestivum Traes_1BL_C5FEAF06E I 0.851
Traes_1DL_23D036A85 Triticum aestivum Traes_1DL_23D036A85 I 0.851
Traes_2BL_245DDBC7B Triticum aestivum Traes_2BL_245DDBC7B I 0.794
TRIUR3_18341 Triticum urartu TRIUR3_18341 I 0.851
TRIUR3_31142 Triticum urartu TRIUR3_31142 I 0.794
VIT_02s0025g01020 Vitis vinifera VIT_02s0025g01020 I 0.817
GBF1 Vitis vinifera VIT_04s0023g01360 I 0.801
VIT_15s0046g01440 Vitis vinifera VIT_15s0046g01440 I 0.821
VIT_18s0001g12120 Vitis vinifera VIT_18s0001g12120 I 0.786
Ca_01293 Cicer arietinum Ca_01293 I 0.821
Ca_17787 Cicer arietinum Ca_17787 I 0.803
Cla021500 Citrullus lanatus Cla021500 I 0.842
Pm018422 Prunus mume Pm018422 I 0.838
Pm024103 Prunus mume Pm024103 I 0.806
29646.m001068 Ricinus communis 29646.m001068 I 0.798
30174.m008698 Ricinus communis 30174.m008698 I 0.866
cassava29861.valid.m1 Manihot esculenta cassava29861.valid.m1 I 0.862
cassava29862.valid.m1 Manihot esculenta cassava29862.valid.m1 I 0.862
cassava43569.valid.m1 Manihot esculenta cassava43569.valid.m1 I 0.853
cassava43570.valid.m1 Manihot esculenta cassava43570.valid.m1 I 0.853
cassava43571.valid.m1 Manihot esculenta cassava43571.valid.m1 I 0.853
cassava45491.m1 Manihot esculenta cassava45491.m1 I 0.798
cassava46468.m1 Manihot esculenta cassava46468.m1 I 0.853
Cucsa.258940 Cucumis sativus Cucsa.258940 I 0.842
estExt_fgenesh1_pg.C_10522 Micromonas pusilla estExt_fgenesh1_pg.C_10522 I 0.785
gw1.27.125.1 Physcomitrella patens gw1.27.125.1 I 0.789
gw1.3.298.1 Physcomitrella patens gw1.3.298.1 I 0.800
gw1.33.173.1 Physcomitrella patens gw1.33.173.1 I 0.787
mgf003302m Mimulus guttatus mgf003302m I 0.838
mgf013423m Mimulus guttatus mgf013423m I 0.838
Aquca_013_00209 Aquilegia coerulea Aquca_013_00209 I 0.817
Aquca_037_00034 Aquilegia coerulea Aquca_037_00034 I 0.824
Bostr.7365s0064 Boechera stricta Bostr.7365s0064 I 0.832
Bostr.7867s1529 Boechera stricta Bostr.7867s1529 I 0.800
Cagra.0050s0071 Capsella grandiflora Cagra.0050s0071 I 0.883
Cagra.1372s0011 Capsella grandiflora Cagra.1372s0011 I 0.832
Cagra.5996s0003 Capsella grandiflora Cagra.5996s0003 I 0.800
Carubv10001247m.g Capsella rubella Carubv10001247m.g I 0.832
Carubv10005287m.g Capsella rubella Carubv10005287m.g I 0.800
Carubv10023434m.g Capsella rubella Carubv10023434m.g I 0.883
Ciclev10020314m.g Citrus clementina Ciclev10020314m.g I 0.818
estExt_fgenesh2_pg.C_Chr_020452 Micromonas sp RCC299 estExt_fgenesh2_pg.C_Chr_020452 I 0.787
Eucgr.E00078 Eucalyptus grandis Eucgr.E00078 I 0.852
evm.TU.supercontig_158.7 Carica papaya evm.TU.supercontig_158.7 I 0.791
gene18928-v1.0-hybrid Fragaria vesca gene18928-v1.0-hybrid I 0.832
gene29546-v1.0-hybrid Fragaria vesca gene29546-v1.0-hybrid I 0.797
gene32022-v1.0-hybrid Fragaria vesca gene32022-v1.0-hybrid I 0.786
Gorai.004G153100 Gossypium raimondii Gorai.004G153100 I 0.852
Gorai.007G105100 Gossypium raimondii Gorai.007G105100 I 0.868
Gorai.008G123200 Gossypium raimondii Gorai.008G123200 I 0.852
gw2.11.550.1 Micromonas sp RCC299 gw2.11.550.1 I 0.792
Lus10003034.g Linum usitatissimum Lus10003034.g I 0.851
Lus10005146.g Linum usitatissimum Lus10005146.g I 0.851
MDP0000138052 Malus domestica MDP0000138052 I 0.840
MDP0000231274 Malus domestica MDP0000231274 I 0.789
MDP0000239688 Malus domestica MDP0000239688 I 0.810
MDP0000493795 Malus domestica MDP0000493795 I 0.840
MDP0000545420 Malus domestica MDP0000545420 I 0.840
orange1.1g014660m.g Citrus sinensis orange1.1g014660m.g I 0.818
Pavir.Ba03287 Panicum virgatum Pavir.Ba03287 I 0.794
Pavir.Bb00931 Panicum virgatum Pavir.Bb00931 I 0.794
Pavir.Ca00968 Panicum virgatum Pavir.Ca00968 I 0.836
Pavir.Ea02315 Panicum virgatum Pavir.Ea02315 I 0.856
Pavir.J01411 Panicum virgatum Pavir.J01411 I 0.829
SapurV1A.0013s0770 Salix purpurea SapurV1A.0013s0770 I 0.831
Thhalv10001533m.g Eutrema salsugineum Thhalv10001533m.g I 0.883
Thhalv10016740m.g Eutrema salsugineum Thhalv10016740m.g I 0.789
Thhalv10025733m.g Eutrema salsugineum Thhalv10025733m.g I 0.813
Thhalv10028761m.g Eutrema salsugineum Thhalv10028761m.g I 0.831
PK07494.1 Cannabis sativa PK07494.1 I 0.796
chr1.CM0579.280.nd Lotus japonicus chr1.CM0579.280.nd I 0.803
PDK_20s1310372g001 Phoenix dactylifera PDK_20s1310372g001 I 0.789
PDK_20s1349941g001 Phoenix dactylifera PDK_20s1349941g001 I 0.845