Afo_R004508 (Aptenodytes forsteri)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Afo_R004508 T069803_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
JDP2
M02836_2.00 		Homo sapiens
ATGASTCAT
ATGASTCAT		 SELEX
Jolma et al.(2013)
JDP2_1 		0.945 0.984
JDP2
M02837_2.00 		Homo sapiens
NRTGACGTCATB
VATGACGTCAYN		 SELEX
Jolma et al.(2013)
JDP2_2 		0.945 0.984
JDP2
M02838_2.00 		Homo sapiens
ATGASTCAT
ATGASTCAT		 SELEX
Jolma et al.(2013)
JDP2_3 		0.945 0.984
JDP2
M02839_2.00 		Homo sapiens
NRTGACGTCATN
NATGACGTCAYN		 SELEX
Jolma et al.(2013)
JDP2_4 		0.945 0.984
JDP2
M04285_2.00 		Homo sapiens
NATGASTCATV
BATGASTCATN		 SELEX
Yin et al.(2017)
JDP2_eDBD_HT-SELEX_1 		0.945 0.984
JDP2
M04286_2.00 		Homo sapiens
NRTGACGTCAYN
NRTGACGTCAYN		 SELEX
Yin et al.(2017)
JDP2_eDBD_HT-SELEX_2 		0.945 0.984
JDP2
M04289_2.00 		Homo sapiens
NRTGMSKCAYN
NRTGMSKCAYN		 SELEX
Yin et al.(2017)
JDP2_FL_HT-SELEX_1 		0.945 0.984
JDP2
M04290_2.00 		Homo sapiens
NRTKACRTMAYN
NRTKAYGTMAYN		 SELEX
Yin et al.(2017)
JDP2_FL_HT-SELEX_2 		0.945 0.984
JDP2
M04287_2.00 		Homo sapiens
BATGASTCAYN
NRTGASTCATV		 SELEX
Yin et al.(2017)
JDP2_eDBD_Methyl-HT-SELEX_1 		0.945 0.984
JDP2
M04288_2.00 		Homo sapiens
NRTGACRTCAYN
NRTGAYGTCAYN		 SELEX
Yin et al.(2017)
JDP2_eDBD_Methyl-HT-SELEX_2 		0.945 0.984
JDP2
M04291_2.00 		Homo sapiens
NRTGASTCAYN
NRTGASTCAYN		 SELEX
Yin et al.(2017)
JDP2_FL_Methyl-HT-SELEX_1 		0.945 0.984
JDP2
M04292_2.00 		Homo sapiens
NVTKACRTCAYN
NRTGAYGTMABN		 SELEX
Yin et al.(2017)
JDP2_FL_Methyl-HT-SELEX_2 		0.945 0.984
Jdp2
M00125_2.00 		Mus musculus
NRTGAYDNNN
NNNHRTCAYN		 PBM
Badis et al.(2009)
Jundm2_0911 		0.941 0.969
Jdp2
M01810_2.00 		Mus musculus
NNTGACGYMW
WKRCGTCANN		 PBM
Weirauch et al.(2014)
pTH5464 		0.941 0.969
Jdp2
M02861_2.00 		Mus musculus
ATGASTCAT
ATGASTCAT		 SELEX
Jolma et al.(2013)
Jdp2_1 		0.941 0.969
Jdp2
M02862_2.00 		Mus musculus
VATGACGTCAYN
NRTGACGTCATB		 SELEX
Jolma et al.(2013)
Jdp2_2 		0.941 0.969
Jdp2
M10033_2.00 		Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$JDP2_03 		0.941 0.969
Atf3
M00758_2.00 		Mus musculus
NNRTKAYNN
NNRTMAYNN		 PBM
Weirauch et al.(2013)
pTH2684 		0.881 0.719
Atf3
M01807_2.00 		Mus musculus
GATGACGY
RCGTCATC		 PBM
Weirauch et al.(2014)
pTH5018 		0.881 0.719
Atf3
M08825_2.00 		Mus musculus
VTGACTCAB
VTGAGTCAB		 Misc
Kulakovskiy et al.(2013)
ATF3_MOUSE.H11MO.0.A 		0.881 0.719
Atf3
M03648_2.00 		Drosophila melanogaster
NRTKACGTMAYN
NRTKACGTMAYN		 SELEX
Nitta et al.(2015)
Atf3_1 		0.825 0.562
ATF3
M04321_2.00 		Homo sapiens
NRTGACGTCAYN
NRTGACGTCAYN		 SELEX
Yin et al.(2017)
ATF3_eDBD_HT-SELEX 		0.786 0.391
ATF3
M04323_2.00 		Homo sapiens
NRTGACGTCAYN
NRTGACGTCAYN		 SELEX
Yin et al.(2017)
ATF3_FL_HT-SELEX 		0.786 0.391
ATF3
M04032_2.00 		Homo sapiens
RTGACGTCAK
MTGACGTCAY		 SELEX
Rodriguez-Martinez et al.(2017)
ATF3.1 		0.786 0.391
ATF3
M04033_2.00 		Homo sapiens
RTGACTCAY
RTGAGTCAY		 SELEX
Rodriguez-Martinez et al.(2017)
ATF3.2 		0.786 0.391
ATF3
M07822_2.00 		Homo sapiens
VGTCACGTGRB
VYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
GM12878_ATF3_HudsonAlpha 		0.786 0.391
ATF3
M07823_2.00 		Homo sapiens
VGTCACGTGRB
VYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_ATF3_HudsonAlpha 		0.786 0.391
ATF3
M07824_2.00 		Homo sapiens
VGTCACGTGRB
VYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
HepG2_ATF3_HudsonAlpha 		0.786 0.391
ATF3
M07825_2.00 		Homo sapiens
VRTSACGTVR
YBACGTSAYB		 ChIP-seq
Gerstein et al.(2012)
K562_ATF3_Harvard 		0.786 0.391
ATF3
M08187_2.00 		Homo sapiens
GTCACGTG
CACGTGAC		 ChIP-seq
Contrino et al.(2012)
Mv41 		0.786 0.391
ATF3
M08188_2.00 		Homo sapiens
NRTGASTCAY
RTGASTCAYN		 ChIP-seq
Contrino et al.(2012)
Mv43 		0.786 0.391
ATF3
M08801_2.00 		Homo sapiens
RRTSACGTVRB
VYBACGTSAYY		 Misc
Kulakovskiy et al.(2013)
ATF3_HUMAN.H11MO.0.A 		0.786 0.391
ATF3
M09489_2.00 		Homo sapiens
NVTGASTCABNN
NNVTGASTCABN		 Misc
Heinz et al.(2010)
GBM-ATF3_GSE33912 		0.786 0.391
ATF3
M09977_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ATF3_02 		0.786 0.391
ATF3
M09978_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ATF3_05 		0.786 0.391
ATF3
M09979_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ATF3_Q6_01 		0.786 0.391
ATF3
M09980_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ATF3_Q6_02 		0.786 0.391
ATF3
M09981_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ATF3_Q6 		0.786 0.391
ATF3
M04322_2.00 		Homo sapiens
NRTGACRTCAYH
DRTGAYGTCAYN		 SELEX
Yin et al.(2017)
ATF3_eDBD_Methyl-HT-SELEX 		0.786 0.391
ATF3
M04324_2.00 		Homo sapiens
NRTGACRTCAYH
DRTGAYGTCAYN		 SELEX
Yin et al.(2017)
ATF3_FL_Methyl-HT-SELEX 		0.786 0.391
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Afo_R004508 bZIP 70 133

Links

Other bZIP family TFs
Other Aptenodytes forsteri TFs

206 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.J36955 Panicum virgatum Pavir.J36955 I
Sb04g036640 Sorghum bicolor Sb04g036640 I
Sb07g005610 Sorghum bicolor Sb07g005610 I
Si010680m.g Setaria italica Si010680m.g I
Si017967m.g Setaria italica Si017967m.g I
Traes_6BL_D00F04562 Triticum aestivum Traes_6BL_D00F04562 I
GRMZM5G857701 Zea mays GRMZM5G857701 I
GRMZM2G167018 Zea mays GRMZM2G167018 I
GRMZM2G140901 Zea mays GRMZM2G140901 I
GRMZM2G063522 Zea mays GRMZM2G063522 I
Pavir.Aa00144 Panicum virgatum Pavir.Aa00144 I
Pavir.Ga00022 Panicum virgatum Pavir.Ga00022 I
BRADI1G32660 Brachypodium distachyon BRADI1G32660 I
Pavir.J34679 Panicum virgatum Pavir.J34679 I
ORGLA06G0205600 Oryza glaberrima ORGLA06G0205600 N
ORGLA02G0046100 Oryza glaberrima ORGLA02G0046100 N
OPUNC08G05520 Oryza punctata OPUNC08G05520 N
ORGLA08G0051100 Oryza glaberrima ORGLA08G0051100 N
ORUFI02G05100 Oryza rufipogon ORUFI02G05100 N
ONIVA02G05190 Oryza nivara ONIVA02G05190 N
ORUFI04G27160 Oryza rufipogon ORUFI04G27160 N
ORUFI06G26420 Oryza rufipogon ORUFI06G26420 N
ORUFI08G06500 Oryza rufipogon ORUFI08G06500 N
OPUNC06G22270 Oryza punctata OPUNC06G22270 N
OS06G0675600 Oryza sativa OS06G0675600 N
OS08G0200600 Oryza sativa OS08G0200600 N
Sb06g028800 Sorghum bicolor Sb06g028800 N
Sb10g027100 Sorghum bicolor Sb10g027100 N
Si006975m.g Setaria italica Si006975m.g N
Si014180m.g Setaria italica Si014180m.g N
Traes_7AL_BE3253C8F Triticum aestivum Traes_7AL_BE3253C8F N
TRIUR3_03895 Triticum urartu TRIUR3_03895 N
Pavir.Db00380 Panicum virgatum Pavir.Db00380 N
Pavir.Fb00532 Panicum virgatum Pavir.Fb00532 N
Pavir.Gb00488 Panicum virgatum Pavir.Gb00488 N
LPERR07G23420 Leersia perrieri LPERR07G23420 N
BGIOSGA014342 Oryza indica BGIOSGA014342 N
BGIOSGA023457 Oryza indica BGIOSGA023457 N
BGIOSGA027481 Oryza indica BGIOSGA027481 N
BRADI3G17287 Brachypodium distachyon BRADI3G17287 N
BRADI3G54817 Brachypodium distachyon BRADI3G54817 N
F775_18200 Aegilops tauschii F775_18200 N
F775_26920 Aegilops tauschii F775_26920 N
GRMZM2G156977 Zea mays GRMZM2G156977 N
GSMUA_Achr11G25720_001 Musa acuminata GSMUA_Achr11G25720_001 N
GSMUA_Achr5G00500_001 Musa acuminata GSMUA_Achr5G00500_001 N
GSMUA_Achr5G26640_001 Musa acuminata GSMUA_Achr5G26640_001 N
GSMUA_Achr6G31350_001 Musa acuminata GSMUA_Achr6G31350_001 N
LPERR02G04310 Leersia perrieri LPERR02G04310 N
LPERR06G20430 Leersia perrieri LPERR06G20430 N
OPUNC02G04160 Oryza punctata OPUNC02G04160 N
LPERR08G05360 Leersia perrieri LPERR08G05360 N
MLOC_25708 Hordeum vulgare MLOC_25708 N
MLOC_53744 Hordeum vulgare MLOC_53744 N
OB08G15810 Oryza brachyantha OB08G15810 N
OBART02G05020 Oryza barthii OBART02G05020 N
OGLUM02G04830 Oryza glumaepatula OGLUM02G04830 N
OGLUM06G25850 Oryza glumaepatula OGLUM06G25850 N
OGLUM08G06200 Oryza glumaepatula OGLUM08G06200 N
OLONG_010248 Oryza longistaminata OLONG_010248 N
OMERI02G05870 Oryza meridionalis OMERI02G05870 N
OMERI06G24740 Oryza meridionalis OMERI06G24740 N
BGIOSGA007071 Oryza indica BGIOSGA007071 N
ONIVA02G35380 Oryza nivara ONIVA02G35380 N
ONIVA08G05790 Oryza nivara ONIVA08G05790 N