CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Fb00532
(
Panicum virgatum
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Pavir.Fb00532
T298849_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Fb00532.1.p
NAC/NAM
12
139
PPGFRFHPRDDELVLDYLLNKLSGRAHGGAAIVDVDLNKCEPWDLPEAACVGGKEWYFFNLRDRKYATGQRTNRATVSGYWKATGKDRAVVAGGEDAAVVGMRKTLVFYRGRAPKGSKTEWVMHEFRL
Links
Other
NAC/NAM
family TFs
Other
Panicum virgatum
TFs
66 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Si014180m.g
Setaria italica
Si014180m.g
N
0.970
Sb07g005610
Sorghum bicolor
Sb07g005610
I
0.969
GRMZM2G167018
Zea mays
GRMZM2G167018
I
0.954
TRIUR3_29250
Triticum urartu
TRIUR3_29250
I
0.953
F775_30297
Aegilops tauschii
F775_30297
I
0.953
Traes_7DL_BDD45DB24
Triticum aestivum
Traes_7DL_BDD45DB24
I
0.953
F775_26920
Aegilops tauschii
F775_26920
N
0.945
ORGLA08G0051100
Oryza glaberrima
ORGLA08G0051100
N
0.943
OGLUM08G06200
Oryza glumaepatula
OGLUM08G06200
N
0.943
ORUFI08G06500
Oryza rufipogon
ORUFI08G06500
N
0.943
ONIVA08G05790
Oryza nivara
ONIVA08G05790
N
0.943
OS08G0200600
Oryza sativa
OS08G0200600
N
0.943
BGIOSGA027481
Oryza indica
BGIOSGA027481
N
0.943
LPERR06G20430
Leersia perrieri
LPERR06G20430
N
0.942
Si006975m.g
Setaria italica
Si006975m.g
N
0.941
OLONG_010248
Oryza longistaminata
OLONG_010248
N
0.939
OPUNC06G22270
Oryza punctata
OPUNC06G22270
N
0.939
ORGLA06G0205600
Oryza glaberrima
ORGLA06G0205600
N
0.939
ORUFI06G26420
Oryza rufipogon
ORUFI06G26420
N
0.939
OGLUM06G25850
Oryza glumaepatula
OGLUM06G25850
N
0.939
OS06G0675600
Oryza sativa
OS06G0675600
N
0.939
OPUNC08G05520
Oryza punctata
OPUNC08G05520
N
0.939
ONIVA02G35380
Oryza nivara
ONIVA02G35380
N
0.939
BGIOSGA023457
Oryza indica
BGIOSGA023457
N
0.939
OBART06G24550
Oryza barthii
OBART06G24550
N
0.939
OB08G15810
Oryza brachyantha
OB08G15810
N
0.938
OMERI06G24740
Oryza meridionalis
OMERI06G24740
N
0.938
MLOC_53744
Hordeum vulgare
MLOC_53744
N
0.936
Traes_7AL_BE3253C8F
Triticum aestivum
Traes_7AL_BE3253C8F
N
0.936
TRIUR3_03895
Triticum urartu
TRIUR3_03895
N
0.936
Sb10g027100
Sorghum bicolor
Sb10g027100
N
0.928
Pavir.Db00380
Panicum virgatum
Pavir.Db00380
N
0.928
OPUNC02G04160
Oryza punctata
OPUNC02G04160
N
0.926
OGLUM02G04830
Oryza glumaepatula
OGLUM02G04830
N
0.921
MLOC_25708
Hordeum vulgare
MLOC_25708
N
0.920
ORGLA02G0046100
Oryza glaberrima
ORGLA02G0046100
N
0.919
ORUFI02G05100
Oryza rufipogon
ORUFI02G05100
N
0.919
ONIVA02G05190
Oryza nivara
ONIVA02G05190
N
0.919
OMERI02G05870
Oryza meridionalis
OMERI02G05870
N
0.917
GRMZM2G063522
Zea mays
GRMZM2G063522
I
0.914
GSMUA_Achr6G31350_001
Musa acuminata
GSMUA_Achr6G31350_001
N
0.913
BRADI1G32660
Brachypodium distachyon
BRADI1G32660
I
0.912
GSMUA_Achr8G33310_001
Musa acuminata
GSMUA_Achr8G33310_001
N
0.911
Pavir.J36955
Panicum virgatum
Pavir.J36955
I
0.909
OBART02G05020
Oryza barthii
OBART02G05020
N
0.908
GSMUA_Achr5G00500_001
Musa acuminata
GSMUA_Achr5G00500_001
N
0.907
LPERR08G05360
Leersia perrieri
LPERR08G05360
N
0.903
Ca_13537
Cicer arietinum
Ca_13537
N
0.902
Pavir.Gb00488
Panicum virgatum
Pavir.Gb00488
N
0.901
F775_18200
Aegilops tauschii
F775_18200
N
0.901
GRMZM2G156977
Zea mays
GRMZM2G156977
N
0.899
evm.TU.supercontig_10.25
Carica papaya
evm.TU.supercontig_10.25
N
0.897
Sb06g028800
Sorghum bicolor
Sb06g028800
N
0.896
MTR_2g064470
Medicago truncatula
MTR_2g064470
N
0.896
GSMUA_Achr9G26140_001
Musa acuminata
GSMUA_Achr9G26140_001
N
0.890
Si010680m.g
Setaria italica
Si010680m.g
I
0.888
chr3.CM0279.430.nd
Lotus japonicus
chr3.CM0279.430.nd
N
0.884
Pavir.Ga00022
Panicum virgatum
Pavir.Ga00022
I
0.884
OB04G32440
Oryza brachyantha
OB04G32440
N
0.882
Eucgr.F01449
Eucalyptus grandis
Eucgr.F01449
N
0.876
ORUFI12G20640
Oryza rufipogon
ORUFI12G20640
N
0.873
OS12G0610600
Oryza sativa
OS12G0610600
N
0.873
OGLUM12G20140
Oryza glumaepatula
OGLUM12G20140
N
0.873
BGIOSGA007071
Oryza indica
BGIOSGA007071
N
0.872
ORGLA12G0157500
Oryza glaberrima
ORGLA12G0157500
N
0.871
OBART12G18490
Oryza barthii
OBART12G18490
N
0.871