Pavir.J36955 (Panicum virgatum)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Pavir.J36955 T299015_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NAC002
M00970_2.00 		Arabidopsis thaliana
NBACGYAWMN
NKWTRCGTVN		 PBM
Lindemose et al.(2014)
ATAF1 		0.908 0.583
NAC002
M07159_2.00 		Arabidopsis thaliana
KVCGTRWNNNWHWHKNHHWYND
HNRWDDNMDWDWNNNWYACGBM		 Dap-seq
OMalley et al.(2016)
ATAF1_col_a 		0.908 0.583
NAC002
M07160_2.00 		Arabidopsis thaliana
YACGY
RCGTR		 Dap-seq
OMalley et al.(2016)
ATAF1_colamp_a 		0.908 0.583
NAC48
M11084_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$NAC6_01 		0.905 0.583
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J36955.1.p NAC/NAM 14 145

Links

Other NAC/NAM family TFs
Other Panicum virgatum TFs

209 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI1G32660 Brachypodium distachyon BRADI1G32660 I 0.995
GRMZM2G063522 Zea mays GRMZM2G063522 I 0.995
Si006975m.g Setaria italica Si006975m.g N 0.992
MLOC_25708 Hordeum vulgare MLOC_25708 N 0.991
OLONG_010248 Oryza longistaminata OLONG_010248 N 0.990
Pavir.Db00380 Panicum virgatum Pavir.Db00380 N 0.989
MLOC_53744 Hordeum vulgare MLOC_53744 N 0.988
Traes_7AL_BE3253C8F Triticum aestivum Traes_7AL_BE3253C8F N 0.988
TRIUR3_03895 Triticum urartu TRIUR3_03895 N 0.988
Pavir.Gb00488 Panicum virgatum Pavir.Gb00488 N 0.988
F775_26920 Aegilops tauschii F775_26920 N 0.987
Pavir.Ga00022 Panicum virgatum Pavir.Ga00022 I 0.985
GRMZM2G167018 Zea mays GRMZM2G167018 I 0.984
LPERR06G20430 Leersia perrieri LPERR06G20430 N 0.984
Si010680m.g Setaria italica Si010680m.g I 0.984
Sb10g027100 Sorghum bicolor Sb10g027100 N 0.983
Sb07g005610 Sorghum bicolor Sb07g005610 I 0.981
F775_30297 Aegilops tauschii F775_30297 I 0.980
Traes_7DL_BDD45DB24 Triticum aestivum Traes_7DL_BDD45DB24 I 0.980
TRIUR3_29250 Triticum urartu TRIUR3_29250 I 0.980
cassava27052.m1 Manihot esculenta cassava27052.m1 I 0.980
OPUNC06G22270 Oryza punctata OPUNC06G22270 N 0.951
GLYMA08G18470 Glycine max GLYMA08G18470 N 0.950
BGIOSGA023457 Oryza indica BGIOSGA023457 N 0.947
OBART06G24550 Oryza barthii OBART06G24550 N 0.947
OGLUM06G25850 Oryza glumaepatula OGLUM06G25850 N 0.947
OMERI06G24740 Oryza meridionalis OMERI06G24740 N 0.947
ONIVA02G35380 Oryza nivara ONIVA02G35380 N 0.947
ORGLA06G0205600 Oryza glaberrima ORGLA06G0205600 N 0.947
ORUFI06G26420 Oryza rufipogon ORUFI06G26420 N 0.947
OS06G0675600 Oryza sativa OS06G0675600 N 0.947
mgf004020m Mimulus guttatus mgf004020m I 0.943
POPTR_0005s07060 Populus trichocarpa POPTR_0005s07060 I 0.937
SapurV1A.0311s0230 Salix purpurea SapurV1A.0311s0230 I 0.937
BGIOSGA018048 Oryza indica BGIOSGA018048 I 0.936
OBART05G16540 Oryza barthii OBART05G16540 I 0.936
OGLUM05G17550 Oryza glumaepatula OGLUM05G17550 I 0.936
ONIVA05G17220 Oryza nivara ONIVA05G17220 I 0.936
OPUNC05G14600 Oryza punctata OPUNC05G14600 I 0.936
ORGLA05G0143100 Oryza glaberrima ORGLA05G0143100 I 0.936
ORUFI05G17750 Oryza rufipogon ORUFI05G17750 I 0.936
OS05G0415400 Oryza sativa OS05G0415400 I 0.936
29650.m000275 Ricinus communis 29650.m000275 N 0.935
POPTR_0007s04780 Populus trichocarpa POPTR_0007s04780 I 0.933
Traes_2AL_CA89051FD Triticum aestivum Traes_2AL_CA89051FD N 0.933
TRIUR3_34020 Triticum urartu TRIUR3_34020 N 0.933
Si036303m.g Setaria italica Si036303m.g I 0.932
Solyc04g009440.2 Solanum lycopersicum Solyc04g009440.2 I 0.932
OMERI05G14410 Oryza meridionalis OMERI05G14410 I 0.931
GLYMA05G32850 Glycine max GLYMA05G32850 I 0.929
Pavir.Ib01528 Panicum virgatum Pavir.Ib01528 I 0.929
SapurV1A.2021s0010 Salix purpurea SapurV1A.2021s0010 I 0.929
MTR_8g094580 Medicago truncatula MTR_8g094580 I 0.928
Cla023574 Citrullus lanatus Cla023574 N 0.924
GSMUA_Achr9G10210_001 Musa acuminata GSMUA_Achr9G10210_001 N 0.922
SapurV1A.0039s0530 Salix purpurea SapurV1A.0039s0530 I 0.921
TCM_035160 Theobroma cacao TCM_035160 I 0.919
Gorai.006G088400 Gossypium raimondii Gorai.006G088400 I 0.919
Gorai.010G051900 Gossypium raimondii Gorai.010G051900 I 0.919
Pavir.Ia03443 Panicum virgatum Pavir.Ia03443 I 0.918
Gorai.005G088800 Gossypium raimondii Gorai.005G088800 I 0.917
Solyc11g017470.1 Solanum lycopersicum Solyc11g017470.1 I 0.916
GSMUA_Achr7G21780_001 Musa acuminata GSMUA_Achr7G21780_001 I 0.915
OGLUM08G21360 Oryza glumaepatula OGLUM08G21360 I 0.913
ORGLA08G0177600 Oryza glaberrima ORGLA08G0177600 I 0.913
ORUFI08G22550 Oryza rufipogon ORUFI08G22550 I 0.913
OS08G0511200 Oryza sativa OS08G0511200 I 0.913
e_gw1.5.134.1 Physcomitrella patens e_gw1.5.134.1 I 0.913
LPERR07G06440 Leersia perrieri LPERR07G06440 I 0.911
ATAF1 Arabidopsis lyrata scaffold_100066.1 I 0.911
OPUNC08G18240 Oryza punctata OPUNC08G18240 I 0.910
e_gw1.117.35.1 Physcomitrella patens e_gw1.117.35.1 I 0.910
e_gw1.259.4.1 Physcomitrella patens e_gw1.259.4.1 I 0.910
TCM_029796 Theobroma cacao TCM_029796 I 0.909
Pavir.Fb00532 Panicum virgatum Pavir.Fb00532 N 0.909
NAC002 Arabidopsis thaliana AT1G01720 D 0.908
BGIOSGA026695 Oryza indica BGIOSGA026695 I 0.908
Bo5g001100 Brassica oleracea Bo5g001100 I 0.908
Bra033239 Brassica rapa Bra033239 I 0.908
GLYMA14G24220 Glycine max GLYMA14G24220 I 0.908
GSMUA_Achr4G02390_001 Musa acuminata GSMUA_Achr4G02390_001 I 0.908
LPERR08G17020 Leersia perrieri LPERR08G17020 I 0.908
MLOC_13932 Hordeum vulgare MLOC_13932 I 0.908
OGLUM12G13410 Oryza glumaepatula OGLUM12G13410 I 0.908
ONIVA08G22710 Oryza nivara ONIVA08G22710 I 0.908
anac032 Vitis vinifera VIT_18s0001g02300 I 0.908
cassava28909.valid.m1 Manihot esculenta cassava28909.valid.m1 I 0.908
mgf013201m Mimulus guttatus mgf013201m I 0.908
Bostr.5325s0094 Boechera stricta Bostr.5325s0094 I 0.908
Cagra.1968s0112 Capsella grandiflora Cagra.1968s0112 I 0.908
Carubv10009926m.g Capsella rubella Carubv10009926m.g I 0.908
SapurV1A.0740s0040 Salix purpurea SapurV1A.0740s0040 I 0.908
SapurV1A.3767s0010 Salix purpurea SapurV1A.3767s0010 I 0.908
PK26157.1 Cannabis sativa PK26157.1 I 0.908
MTR_1g008740 Medicago truncatula MTR_1g008740 I 0.907
OMERI04G21180 Oryza meridionalis OMERI04G21180 N 0.907
BGIOSGA037382 Oryza indica BGIOSGA037382 I 0.906
BRADI2G57100 Brachypodium distachyon BRADI2G57100 I 0.906
F775_28813 Aegilops tauschii F775_28813 I 0.906
GSMUA_Achr6G18720_001 Musa acuminata GSMUA_Achr6G18720_001 I 0.906
MLOC_59162 Hordeum vulgare MLOC_59162 I 0.906
OMERI12G08420 Oryza meridionalis OMERI12G08420 I 0.906
ONIVA12G11920 Oryza nivara ONIVA12G11920 I 0.906
ORUFI10G07040 Oryza rufipogon ORUFI10G07040 I 0.906
OS12G0477400 Oryza sativa OS12G0477400 I 0.906
TRAES3BF002300010CFD_g Triticum aestivum TRAES3BF002300010CFD_g I 0.906
TRIUR3_14109 Triticum urartu TRIUR3_14109 I 0.906
e_gw1.140.53.1 Physcomitrella patens e_gw1.140.53.1 I 0.906
BGIOSGA000374 Oryza indica BGIOSGA000374 I 0.905
LPERR01G34090 Leersia perrieri LPERR01G34090 I 0.905
LPERR05G13490 Leersia perrieri LPERR05G13490 I 0.905
OB01G48340 Oryza brachyantha OB01G48340 I 0.905
OB05G24820 Oryza brachyantha OB05G24820 I 0.905
OBART01G39590 Oryza barthii OBART01G39590 I 0.905
OGLUM01G43820 Oryza glumaepatula OGLUM01G43820 I 0.905
OMERI01G36460 Oryza meridionalis OMERI01G36460 I 0.905
ONIVA01G44460 Oryza nivara ONIVA01G44460 I 0.905
OPUNC01G38300 Oryza punctata OPUNC01G38300 I 0.905
ORGLA01G0334900 Oryza glaberrima ORGLA01G0334900 I 0.905
ORUFI01G42940 Oryza rufipogon ORUFI01G42940 I 0.905
NAC48 Oryza sativa OS01G0884300 D 0.905
Si022924m.g Setaria italica Si022924m.g I 0.905
Pavir.Ca02208 Panicum virgatum Pavir.Ca02208 I 0.905
Pavir.Cb00769 Panicum virgatum Pavir.Cb00769 I 0.905
AMTR_s00022p00160350 Amborella trichopoda AMTR_s00022p00160350 I 0.904
BGIOSGA019897 Oryza indica BGIOSGA019897 I 0.904
OGLUM05G17980 Oryza glumaepatula OGLUM05G17980 I 0.904
ONIVA05G17670 Oryza nivara ONIVA05G17670 I 0.904
ORGLA05G0146600 Oryza glaberrima ORGLA05G0146600 I 0.904
Sb02g006680 Sorghum bicolor Sb02g006680 I 0.904
Sb03g041920 Sorghum bicolor Sb03g041920 I 0.904
VIT_06s0004g00020 Vitis vinifera VIT_06s0004g00020 I 0.904
Cla011742 Citrullus lanatus Cla011742 I 0.904
e_gw1.164.26.1 Physcomitrella patens e_gw1.164.26.1 I 0.904
Pavir.Bb00806 Panicum virgatum Pavir.Bb00806 I 0.904
GRMZM2G014653 Zea mays GRMZM2G014653 I 0.903
GRMZM2G079632 Zea mays GRMZM2G079632 I 0.903
GRMZM2G162739 Zea mays GRMZM2G162739 I 0.903
Si002413m.g Setaria italica Si002413m.g I 0.903
e_gw1.164.18.1 Physcomitrella patens e_gw1.164.18.1 I 0.903
Aquca_014_00255 Aquilegia coerulea Aquca_014_00255 I 0.902
Pavir.Ba03301 Panicum virgatum Pavir.Ba03301 I 0.902
GRMZM2G083347 Zea mays GRMZM2G083347 I 0.901
Si030752m.g Setaria italica Si030752m.g I 0.901
SapurV1A.0365s0200 Salix purpurea SapurV1A.0365s0200 I 0.901
PGSC0003DMG400029593 Solanum tuberosum PGSC0003DMG400029593 I 0.900
e_gw1.259.32.1 Physcomitrella patens e_gw1.259.32.1 I 0.900
Cagra.6372s0006 Capsella grandiflora Cagra.6372s0006 N 0.900
Carubv10011081m.g Capsella rubella Carubv10011081m.g N 0.900
SapurV1A.0093s0260 Salix purpurea SapurV1A.0093s0260 I 0.900
POPTR_0004s04920 Populus trichocarpa POPTR_0004s04920 I 0.899
OPUNC12G10470 Oryza punctata OPUNC12G10470 I 0.898
GSMUA_Achr3G23360_001 Musa acuminata GSMUA_Achr3G23360_001 N 0.897
BRADI4G07527 Brachypodium distachyon BRADI4G07527 I 0.896
GSMUA_Achr9G10040_001 Musa acuminata GSMUA_Achr9G10040_001 I 0.896
LPERR05G13140 Leersia perrieri LPERR05G13140 I 0.896
gw1.1.690.1 Physcomitrella patens gw1.1.690.1 I 0.896
Si014180m.g Setaria italica Si014180m.g N 0.895
Pavir.Ea03621 Panicum virgatum Pavir.Ea03621 I 0.895
NAC026 Arabidopsis thaliana AT1G62700 I 0.893
ORGLA04G0226100 Oryza glaberrima ORGLA04G0226100 N 0.893
fgenesh1_pg.scaffold_182000024 Physcomitrella patens fgenesh1_pg.scaffold_182000024 I 0.893
Thhalv10023502m.g Eutrema salsugineum Thhalv10023502m.g I 0.893
GSMUA_Achr6G31580_001 Musa acuminata GSMUA_Achr6G31580_001 I 0.892
PRUPE_ppa008801mg Prunus persica PRUPE_ppa008801mg N 0.891
Solyc08g074300.2 Solanum lycopersicum Solyc08g074300.2 I 0.891
Ca_13537 Cicer arietinum Ca_13537 N 0.891
gw1.6.394.1 Physcomitrella patens gw1.6.394.1 I 0.890
PK23481.1 Cannabis sativa PK23481.1 N 0.890
chr3.CM0279.430.nd Lotus japonicus chr3.CM0279.430.nd N 0.890
BRADI2G03467 Brachypodium distachyon BRADI2G03467 I 0.889
MLOC_65286 Hordeum vulgare MLOC_65286 I 0.889
Sb08g014060 Sorghum bicolor Sb08g014060 I 0.889
LPERR12G09780 Leersia perrieri LPERR12G09780 I 0.888
MTR_2g064470 Medicago truncatula MTR_2g064470 N 0.887
MTR_3g096400 Medicago truncatula MTR_3g096400 N 0.886
OLONG_023103 Oryza longistaminata OLONG_023103 I 0.886
gene10469-v1.0-hybrid Fragaria vesca gene10469-v1.0-hybrid N 0.886
F775_20638 Aegilops tauschii F775_20638 I 0.884
Traes_7AL_74CC91D39 Triticum aestivum Traes_7AL_74CC91D39 I 0.884
GSMUA_Achr4G32010_001 Musa acuminata GSMUA_Achr4G32010_001 I 0.883
PGSC0003DMG400009920 Solanum tuberosum PGSC0003DMG400009920 I 0.883
Bostr.0556s0555 Boechera stricta Bostr.0556s0555 I 0.883
GSMUA_Achr6G30050_001 Musa acuminata GSMUA_Achr6G30050_001 N 0.882
Eucgr.F01449 Eucalyptus grandis Eucgr.F01449 N 0.882
GSMUA_Achr7G23250_001 Musa acuminata GSMUA_Achr7G23250_001 I 0.881
PGSC0003DMG400022134 Solanum tuberosum PGSC0003DMG400022134 N 0.881
Sb03g000330 Sorghum bicolor Sb03g000330 I 0.880
Si004195m.g Setaria italica Si004195m.g I 0.880
GSMUA_Achr10G08120_001 Musa acuminata GSMUA_Achr10G08120_001 I 0.878
BGIOSGA014034 Oryza indica BGIOSGA014034 I 0.877
OGLUM04G30580 Oryza glumaepatula OGLUM04G30580 I 0.877
ONIVA04G29890 Oryza nivara ONIVA04G29890 I 0.877
ORGLA04G0270600 Oryza glaberrima ORGLA04G0270600 I 0.877
ORUFI04G32410 Oryza rufipogon ORUFI04G32410 I 0.877
OS04G0691300 Oryza sativa OS04G0691300 I 0.877
Si022714m.g Setaria italica Si022714m.g I 0.877
mgf002365m Mimulus guttatus mgf002365m I 0.877
SapurV1A.0869s0210 Salix purpurea SapurV1A.0869s0210 I 0.877
OBART04G25950 Oryza barthii OBART04G25950 N 0.876
Ciclev10021117m.g Citrus clementina Ciclev10021117m.g N 0.876
Pavir.Ea00010 Panicum virgatum Pavir.Ea00010 I 0.876
GRMZM2G139700 Zea mays GRMZM2G139700 I 0.874
LPERR01G00270 Leersia perrieri LPERR01G00270 I 0.874
cassava39074.m1 Manihot esculenta cassava39074.m1 I 0.874
SELMODRAFT_69090 Selaginella moellendorffii SELMODRAFT_69090 I 0.872
SELMODRAFT_71305 Selaginella moellendorffii SELMODRAFT_71305 I 0.872
SapurV1A.0076s0070 Salix purpurea SapurV1A.0076s0070 I 0.872
Cla023594 Citrullus lanatus Cla023594 I 0.871