CGI_10016115 (Crassostrea gigas)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 CGI_10016115 T083520_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
opa
M03668_2.00 		Drosophila melanogaster
BVCCCCCCRYNGHB
VDCNRYGGGGGGBV		 SELEX
Nitta et al.(2015)
opa_1 		0.807 0.945
opa
M05861_2.00 		Drosophila melanogaster
VCCCCCCRYNGNK
MNCNRYGGGGGGB		 SMiLE-seq
Isakova et al.(2017)
Opa 		0.807 0.945
opa
M06468_2.00 		Drosophila melanogaster
GMCCCCCCGCDG
CHGCGGGGGGKC		 B1H
Mathelier et al.(2014)
MA0456.1 		0.807 0.945
opa
M06062_2.00 		Drosophila melanogaster
GMCCCCCCRCDG
CHGYGGGGGGKC		 B1H
Zhu et al.(2011)
opa_NAR_FBgn0003002 		0.807 0.945
opa
M06063_2.00 		Drosophila melanogaster
MKVMMCCCCMCYR
YRGKGGGGKKBMK		 B1H
Zhu et al.(2011)
Opa_SANGER_5_FBgn0003002 		0.807 0.945
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EKC32444 C2H2 ZF 22 48
EKC32444 C2H2 ZF 54 78
EKC32444 C2H2 ZF 84 108
EKC32444 C2H2 ZF 114 138

Links

Other C2H2 ZF family TFs
Other Crassostrea gigas TFs

61 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc02g068510.1 Solanum lycopersicum Solyc02g068510.1 N 0.000
Pm010795 Prunus mume Pm010795 N 0.000
Cla010042 Citrullus lanatus Cla010042 N 0.000
VIT_01s0011g01410 Vitis vinifera VIT_01s0011g01410 N 0.000
TRIUR3_33737 Triticum urartu TRIUR3_33737 N 0.000
Traes_7DL_B446D4CC6 Triticum aestivum Traes_7DL_B446D4CC6 N 0.000
Traes_7AL_5E9E6A334 Triticum aestivum Traes_7AL_5E9E6A334 N 0.000
Traes_6DS_CA4C01DEF Triticum aestivum Traes_6DS_CA4C01DEF N 0.000
Traes_6BS_4DA724E79 Triticum aestivum Traes_6BS_4DA724E79 N 0.000
TCM_006017 Theobroma cacao TCM_006017 N 0.000
cassava11490.m1 Manihot esculenta cassava11490.m1 N 0.000
Si018139m.g Setaria italica Si018139m.g N 0.000
Si007394m.g Setaria italica Si007394m.g N 0.000
Sb10g026620 Sorghum bicolor Sb10g026620 N 0.000
Sb04g004830 Sorghum bicolor Sb04g004830 N 0.000
PRUPE_ppa024886mg Prunus persica PRUPE_ppa024886mg N 0.000
POPTR_0001s15920 Populus trichocarpa POPTR_0001s15920 N 0.000
OS06G0666100 Oryza sativa OS06G0666100 N 0.000
OS02G0172800 Oryza sativa OS02G0172800 N 0.000
Pavir.Aa03378 Panicum virgatum Pavir.Aa03378 N 0.000
PDK_20s1530701g001 Phoenix dactylifera PDK_20s1530701g001 N 0.000
LjSGA_033751.1 Lotus japonicus LjSGA_033751.1 N 0.000
PK04104.1 Cannabis sativa PK04104.1 N 0.000
Thhalv10009789m.g Eutrema salsugineum Thhalv10009789m.g N 0.000
SapurV1A.0210s0200 Salix purpurea SapurV1A.0210s0200 N 0.000
SapurV1A.0104s0310 Salix purpurea SapurV1A.0104s0310 N 0.000
Pavir.Da00255 Panicum virgatum Pavir.Da00255 N 0.000
Pavir.Ab00578 Panicum virgatum Pavir.Ab00578 N 0.000
ORUFI02G05620 Oryza rufipogon ORUFI02G05620 N 0.000
Gorai.008G237000 Gossypium raimondii Gorai.008G237000 N 0.000
Eucgr.E04309 Eucalyptus grandis Eucgr.E04309 N 0.000
Eucgr.E00457 Eucalyptus grandis Eucgr.E00457 N 0.000
Carubv10011663m.g Capsella rubella Carubv10011663m.g N 0.000
Cagra.1508s0089 Capsella grandiflora Cagra.1508s0089 N 0.000
Bostr.15697s0409 Boechera stricta Bostr.15697s0409 N 0.000
Cucsa.048750 Cucumis sativus Cucsa.048750 N 0.000
cassava17724.valid.m1 Manihot esculenta cassava17724.valid.m1 N 0.000
BRADI3G05380 Brachypodium distachyon BRADI3G05380 N 0.000
GSMUA_Achr2G02580_001 Musa acuminata GSMUA_Achr2G02580_001 N 0.000
GRMZM2G017882 Zea mays GRMZM2G017882 N 0.000
GLYMA15G17040 Glycine max GLYMA15G17040 N 0.000
GLYMA09G05781 Glycine max GLYMA09G05781 N 0.000
GLYMA08G09191 Glycine max GLYMA08G09191 N 0.000
GLYMA05G26271 Glycine max GLYMA05G26271 N 0.000
fgenesh1_pm.C_scaffold_1002523 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002523 N 0.000
F775_02274 Aegilops tauschii F775_02274 N 0.000
GSMUA_Achr6G20140_001 Musa acuminata GSMUA_Achr6G20140_001 N 0.000
BRADI1G32050 Brachypodium distachyon BRADI1G32050 N 0.000
Bra038403 Brassica rapa Bra038403 N 0.000
Bra014899 Brassica rapa Bra014899 N 0.000
Bo7g041160 Brassica oleracea Bo7g041160 N 0.000
Bo2g121040 Brassica oleracea Bo2g121040 N 0.000
BGIOSGA023427 Oryza indica BGIOSGA023427 N 0.000
BGIOSGA007635 Oryza indica BGIOSGA007635 N 0.000
AT1G31040 Arabidopsis thaliana AT1G31040 N 0.000
OGLUM02G05380 Oryza glumaepatula OGLUM02G05380 N 0.000
ORGLA06G0201700 Oryza glaberrima ORGLA06G0201700 N 0.000
OPUNC06G21750 Oryza punctata OPUNC06G21750 N 0.000
OPUNC02G04680 Oryza punctata OPUNC02G04680 N 0.000
ONIVA03G43780 Oryza nivara ONIVA03G43780 N 0.000
ONIVA02G05860 Oryza nivara ONIVA02G05860 N 0.000
OMERI06G23930 Oryza meridionalis OMERI06G23930 N 0.000
OLONG_011712 Oryza longistaminata OLONG_011712 N 0.000
OGLUM06G25260 Oryza glumaepatula OGLUM06G25260 N 0.000
AMTR_s00059p00116150 Amborella trichopoda AMTR_s00059p00116150 N 0.000
OBART06G24000 Oryza barthii OBART06G24000 N 0.000
OBART02G05520 Oryza barthii OBART02G05520 N 0.000
OB02G14750 Oryza brachyantha OB02G14750 N 0.000
MLOC_21744 Hordeum vulgare MLOC_21744 N 0.000
LPERR06G19930 Leersia perrieri LPERR06G19930 N 0.000
LPERR02G04770 Leersia perrieri LPERR02G04770 N 0.000
GSMUA_AchrUn_randomG23740_001 Musa acuminata GSMUA_AchrUn_randomG23740_001 N 0.000
GSMUA_Achr9G30790_001 Musa acuminata GSMUA_Achr9G30790_001 N 0.000