ENSAMXG00000018733 (Astyanax mexicanus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSAMXG00000018733 T087384_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.792 0.841
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.792 0.841
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.792 0.841
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.792 0.841
CG12605
M03691_2.00 		Drosophila melanogaster
RHGCAACAGGTGN
NCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
CG12605_1 		0.788 0.823
CG12605
M06139_2.00 		Drosophila melanogaster
CACCTGTKG
CMACAGGTG		 B1H
Zhu et al.(2011)
CG12605_SANGER_10_FBgn0035481 		0.788 0.823
CG12605
M06140_2.00 		Drosophila melanogaster
MCACCTGTKGVNN
NNBCMACAGGTGK		 B1H
Zhu et al.(2011)
CG12605_SOLEXA_5_FBgn0035481 		0.788 0.823
SCRT1
M02929_2.00 		Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY		 SELEX
Jolma et al.(2013)
SCRT1_1 		0.785 0.885
SCRT1
M04655_2.00 		Homo sapiens
NKCAACAGGTD
HACCTGTTGMN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX 		0.785 0.885
SCRT1
M08397_2.00 		Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY		 ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE 		0.785 0.885
SCRT1
M04656_2.00 		Homo sapiens
NGCRACAGGTD
HACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX 		0.785 0.885
SCRT2
M02925_2.00 		Homo sapiens
RHGCAACAGGTGB
VCACCTGTTGCDY		 SELEX
Jolma et al.(2013)
SCRT2_1 		0.784 0.867
SCRT2
M04643_2.00 		Homo sapiens
NGCAACAGGTD
HACCTGTTGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX 		0.784 0.867
SCRT2
M04644_2.00 		Homo sapiens
NGCRACAGGTG
CACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX 		0.784 0.867
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSAMXP00000019287 C2H2 ZF 179 201
ENSAMXP00000019287 C2H2 ZF 211 232
ENSAMXP00000019287 C2H2 ZF 236 258
ENSAMXP00000019287 C2H2 ZF 264 286
ENSAMXP00000019287 C2H2 ZF 292 313

Links

Other C2H2 ZF family TFs
Other Astyanax mexicanus TFs

193 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.supercontig_29.139 Carica papaya evm.TU.supercontig_29.139 N 0.000
PK22905.1 Cannabis sativa PK22905.1 N 0.000
SapurV1A.0325s0140 Salix purpurea SapurV1A.0325s0140 N 0.000
SapurV1A.0324s0040 Salix purpurea SapurV1A.0324s0040 N 0.000
orange1.1g042460m.g Citrus sinensis orange1.1g042460m.g N 0.000
MDP0000275704 Malus domestica MDP0000275704 N 0.000
Lus10004353.g Linum usitatissimum Lus10004353.g N 0.000
Gorai.008G238300 Gossypium raimondii Gorai.008G238300 N 0.000
Gorai.004G200600 Gossypium raimondii Gorai.004G200600 N 0.000
Gorai.003G170700 Gossypium raimondii Gorai.003G170700 N 0.000
gene31749-v1.0-hybrid Fragaria vesca gene31749-v1.0-hybrid N 0.000
POPTR_0001s00480 Populus trichocarpa POPTR_0001s00480 N 0.000
Ciclev10018916m.g Citrus clementina Ciclev10018916m.g N 0.000
Cucsa.320850 Cucumis sativus Cucsa.320850 N 0.000
cassava30062.valid.m1 Manihot esculenta cassava30062.valid.m1 N 0.000
29916.m000544 Ricinus communis 29916.m000544 N 0.000
Pm023512 Prunus mume Pm023512 N 0.000
Cla005738 Citrullus lanatus Cla005738 N 0.000
VIT_02s0154g00400 Vitis vinifera VIT_02s0154g00400 N 0.000
TCM_015991 Theobroma cacao TCM_015991 N 0.000
PRUPE_ppa001561mg Prunus persica PRUPE_ppa001561mg N 0.000
POPTR_0003s11020 Populus trichocarpa POPTR_0003s11020 N 0.000