SCRT2 (Meleagris gallopavo)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSMGAG00000016579 T098260_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SCRT1
M02929_2.00 		Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY		 SELEX
Jolma et al.(2013)
SCRT1_1 		0.790 0.885
SCRT1
M04655_2.00 		Homo sapiens
NKCAACAGGTD
HACCTGTTGMN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX 		0.790 0.885
SCRT1
M08397_2.00 		Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY		 ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE 		0.790 0.885
SCRT1
M04656_2.00 		Homo sapiens
NGCRACAGGTD
HACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX 		0.790 0.885
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.788 0.850
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.788 0.850
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.788 0.850
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.788 0.850
CG12605
M03691_2.00 		Drosophila melanogaster
RHGCAACAGGTGN
NCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
CG12605_1 		0.785 0.841
CG12605
M06139_2.00 		Drosophila melanogaster
CACCTGTKG
CMACAGGTG		 B1H
Zhu et al.(2011)
CG12605_SANGER_10_FBgn0035481 		0.785 0.841
CG12605
M06140_2.00 		Drosophila melanogaster
MCACCTGTKGVNN
NNBCMACAGGTGK		 B1H
Zhu et al.(2011)
CG12605_SOLEXA_5_FBgn0035481 		0.785 0.841
SCRT2
M02925_2.00 		Homo sapiens
RHGCAACAGGTGB
VCACCTGTTGCDY		 SELEX
Jolma et al.(2013)
SCRT2_1 		0.784 0.885
SCRT2
M04643_2.00 		Homo sapiens
NGCAACAGGTD
HACCTGTTGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX 		0.784 0.885
SCRT2
M04644_2.00 		Homo sapiens
NGCRACAGGTG
CACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX 		0.784 0.885
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMGAP00000017821 C2H2 ZF 87 109
ENSMGAP00000017821 C2H2 ZF 119 140
ENSMGAP00000017821 C2H2 ZF 144 166
ENSMGAP00000017821 C2H2 ZF 172 194
ENSMGAP00000017821 C2H2 ZF 200 221

Links

Other C2H2 ZF family TFs
Other Meleagris gallopavo TFs

194 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LFY Arabidopsis thaliana AT5G61850 D 0.000
cassava19992.m1 Manihot esculenta cassava19992.m1 I 0.000
Carubv10028602m.g Capsella rubella Carubv10028602m.g I 0.000
Cagra.4553s0022 Capsella grandiflora Cagra.4553s0022 I 0.000
Bostr.26833s0050 Boechera stricta Bostr.26833s0050 I 0.000
Aquca_043_00044 Aquilegia coerulea Aquca_043_00044 I 0.000
mgf020579m Mimulus guttatus mgf020579m I 0.000
estExt_fgenesh1_pg.C_740147 Physcomitrella patens estExt_fgenesh1_pg.C_740147 I 0.000
Cucsa.156880 Cucumis sativus Cucsa.156880 I 0.000
cassava40548.m1 Manihot esculenta cassava40548.m1 I 0.000
Ciclev10033942m.g Citrus clementina Ciclev10033942m.g I 0.000
30147.m014401 Ricinus communis 30147.m014401 I 0.000
Pm024610 Prunus mume Pm024610 I 0.000
Cla019619 Citrullus lanatus Cla019619 I 0.000
Ca_01386 Cicer arietinum Ca_01386 I 0.000
LFY Vitis vinifera VIT_17s0000g00150 I 0.000
Traes_2BL_8DEC0EFBF Triticum aestivum Traes_2BL_8DEC0EFBF I 0.000
Traes_2AL_83D0D0C3F Triticum aestivum Traes_2AL_83D0D0C3F I 0.000
TCM_014768 Theobroma cacao TCM_014768 I 0.000
Eucgr.K02192 Eucalyptus grandis Eucgr.K02192 I 0.000
evm.TU.supercontig_13.181 Carica papaya evm.TU.supercontig_13.181 I 0.000
gene30683-v1.0-hybrid Fragaria vesca gene30683-v1.0-hybrid I 0.000
gene30747-v1.0-hybrid Fragaria vesca gene30747-v1.0-hybrid I 0.000
gene30750-v1.0-hybrid Fragaria vesca gene30750-v1.0-hybrid I 0.000
gene33406-v1.0-hybrid Fragaria vesca gene33406-v1.0-hybrid I 0.000
Gorai.001G053900 Gossypium raimondii Gorai.001G053900 I 0.000
Lus10016732.g Linum usitatissimum Lus10016732.g I 0.000
Lus10022427.g Linum usitatissimum Lus10022427.g I 0.000
orange1.1g044766m.g Citrus sinensis orange1.1g044766m.g I 0.000
Pavir.Ga00621 Panicum virgatum Pavir.Ga00621 I 0.000
Pavir.Gb00795 Panicum virgatum Pavir.Gb00795 I 0.000
SapurV1A.2394s0010 Salix purpurea SapurV1A.2394s0010 I 0.000
Thhalv10005606m.g Eutrema salsugineum Thhalv10005606m.g I 0.000
chr1.CM0094.750.nd Lotus japonicus chr1.CM0094.750.nd I 0.000
GLYMA04G37900 Glycine max GLYMA04G37900 I 0.000
OB04G30790 Oryza brachyantha OB04G30790 I 0.000
MTR_3g098560 Medicago truncatula MTR_3g098560 I 0.000
MLOC_14305 Hordeum vulgare MLOC_14305 I 0.000
LPERR04G19570 Leersia perrieri LPERR04G19570 I 0.000
GSMUA_Achr6G16390_001 Musa acuminata GSMUA_Achr6G16390_001 I 0.000
GRMZM2G180190 Zea mays GRMZM2G180190 I 0.000
GRMZM2G098813 Zea mays GRMZM2G098813 I 0.000
GLYMA06G17170 Glycine max GLYMA06G17170 I 0.000
OBART04G23870 Oryza barthii OBART04G23870 I 0.000
BRADI5G20340 Brachypodium distachyon BRADI5G20340 I 0.000
Bra029305 Brassica rapa Bra029305 I 0.000
Bra019619 Brassica rapa Bra019619 I 0.000
Bo3g109270 Brassica oleracea Bo3g109270 I 0.000
Bo2g161690 Brassica oleracea Bo2g161690 I 0.000
OSL Oryza indica BGIOSGA014428 I 0.000
AMTR_s00016p00083040 Amborella trichopoda AMTR_s00016p00083040 I 0.000
ORUFI04G25610 Oryza rufipogon ORUFI04G25610 I 0.000
Solyc03g118160.1 Solanum lycopersicum Solyc03g118160.1 I 0.000
Si011756m.g Setaria italica Si011756m.g I 0.000
SELMODRAFT_85923 Selaginella moellendorffii SELMODRAFT_85923 I 0.000
Sb06g027340 Sorghum bicolor Sb06g027340 I 0.000
PRUPE_ppa006372mg Prunus persica PRUPE_ppa006372mg I 0.000
FL Populus trichocarpa POPTR_0015s11820 I 0.000
PGSC0003DMG400014174 Solanum tuberosum PGSC0003DMG400014174 I 0.000
FL Oryza sativa OS04G0598300 I 0.000
LFY Arabidopsis lyrata Al_scaffold_0008_2690 I 0.000
ORGLA04G0204600 Oryza glaberrima ORGLA04G0204600 I 0.000
OPUNC04G21410 Oryza punctata OPUNC04G21410 I 0.000
ONIVA04G23030 Oryza nivara ONIVA04G23030 I 0.000
OMERI04G19760 Oryza meridionalis OMERI04G19760 I 0.000
OLONG_021167 Oryza longistaminata OLONG_021167 I 0.000
OGLUM04G23830 Oryza glumaepatula OGLUM04G23830 I 0.000
estExt_fgenesh1_pg.C_520047 Physcomitrella patens estExt_fgenesh1_pg.C_520047 N 0.000