Scrt1 (Rattus norvegicus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSRNOG00000025594 T109125_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SCRT1
M02929_2.00 		Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY		 SELEX
Jolma et al.(2013)
SCRT1_1 		0.827 1.000
SCRT1
M04655_2.00 		Homo sapiens
NKCAACAGGTD
HACCTGTTGMN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX 		0.827 1.000
SCRT1
M08397_2.00 		Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY		 ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE 		0.827 1.000
SCRT1
M04656_2.00 		Homo sapiens
NGCRACAGGTD
HACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX 		0.827 1.000
SCRT2
M02925_2.00 		Homo sapiens
RHGCAACAGGTGB
VCACCTGTTGCDY		 SELEX
Jolma et al.(2013)
SCRT2_1 		0.786 0.885
SCRT2
M04643_2.00 		Homo sapiens
NGCAACAGGTD
HACCTGTTGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX 		0.786 0.885
SCRT2
M04644_2.00 		Homo sapiens
NGCRACAGGTG
CACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX 		0.786 0.885
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.785 0.858
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.785 0.858
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.785 0.858
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.785 0.858
CG12605
M03691_2.00 		Drosophila melanogaster
RHGCAACAGGTGN
NCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
CG12605_1 		0.767 0.814
CG12605
M06139_2.00 		Drosophila melanogaster
CACCTGTKG
CMACAGGTG		 B1H
Zhu et al.(2011)
CG12605_SANGER_10_FBgn0035481 		0.767 0.814
CG12605
M06140_2.00 		Drosophila melanogaster
MCACCTGTKGVNN
NNBCMACAGGTGK		 B1H
Zhu et al.(2011)
CG12605_SOLEXA_5_FBgn0035481 		0.767 0.814
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000030637 C2H2 ZF 191 213
ENSRNOP00000030637 C2H2 ZF 223 244
ENSRNOP00000030637 C2H2 ZF 248 270
ENSRNOP00000030637 C2H2 ZF 276 298
ENSRNOP00000030637 C2H2 ZF 304 325

Links

Other C2H2 ZF family TFs
Other Rattus norvegicus TFs

195 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava15723.m1 Manihot esculenta cassava15723.m1 N 0.000
SapurV1A.0451s0060 Salix purpurea SapurV1A.0451s0060 N 0.000
orange1.1g004488m.g Citrus sinensis orange1.1g004488m.g N 0.000
Lus10040284.g Linum usitatissimum Lus10040284.g N 0.000
Lus10023404.g Linum usitatissimum Lus10023404.g N 0.000
Gorai.011G266200 Gossypium raimondii Gorai.011G266200 N 0.000
Gorai.010G201000 Gossypium raimondii Gorai.010G201000 N 0.000
evm.TU.supercontig_1.422 Carica papaya evm.TU.supercontig_1.422 N 0.000
Eucgr.J01244 Eucalyptus grandis Eucgr.J01244 N 0.000
Eucgr.J01242 Eucalyptus grandis Eucgr.J01242 N 0.000
Eucgr.G02941 Eucalyptus grandis Eucgr.G02941 N 0.000
Eucgr.G02939 Eucalyptus grandis Eucgr.G02939 N 0.000
Ciclev10030787m.g Citrus clementina Ciclev10030787m.g N 0.000
Aquca_009_00954 Aquilegia coerulea Aquca_009_00954 N 0.000
mgf014897m Mimulus guttatus mgf014897m N 0.000
cassava31335.valid.m1 Manihot esculenta cassava31335.valid.m1 N 0.000
PGSC0003DMG400006352 Solanum tuberosum PGSC0003DMG400006352 N 0.000
27568.m000253 Ricinus communis 27568.m000253 N 0.000
Pm018822 Prunus mume Pm018822 N 0.000
Cla018179 Citrullus lanatus Cla018179 N 0.000
VIT_13s0019g01790 Vitis vinifera VIT_13s0019g01790 N 0.000
VIT_13s0019g01780 Vitis vinifera VIT_13s0019g01780 N 0.000
VIT_13s0019g01710 Vitis vinifera VIT_13s0019g01710 N 0.000
VIT_13s0019g01700 Vitis vinifera VIT_13s0019g01700 N 0.000
VIT_08s0007g00510 Vitis vinifera VIT_08s0007g00510 N 0.000
TCM_042705 Theobroma cacao TCM_042705 N 0.000
Solyc05g053090.1 Solanum lycopersicum Solyc05g053090.1 N 0.000
PRUPE_ppa021438mg Prunus persica PRUPE_ppa021438mg N 0.000
XM_002316242.1 Populus trichocarpa POPTR_0010s20980 N 0.000
POPTR_0008s05750 Populus trichocarpa POPTR_0008s05750 N 0.000
PGSC0003DMG400027198 Solanum tuberosum PGSC0003DMG400027198 N 0.000