GH23039 (Drosophila grimshawi)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 FBgn0130496 T115456_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
opa
M03668_2.00 		Drosophila melanogaster
BVCCCCCCRYNGHB
VDCNRYGGGGGGBV		 SELEX
Nitta et al.(2015)
opa_1 		0.827 1.000
opa
M05861_2.00 		Drosophila melanogaster
VCCCCCCRYNGNK
MNCNRYGGGGGGB		 SMiLE-seq
Isakova et al.(2017)
Opa 		0.827 1.000
opa
M06468_2.00 		Drosophila melanogaster
GMCCCCCCGCDG
CHGCGGGGGGKC		 B1H
Mathelier et al.(2014)
MA0456.1 		0.827 1.000
opa
M06062_2.00 		Drosophila melanogaster
GMCCCCCCRCDG
CHGYGGGGGGKC		 B1H
Zhu et al.(2011)
opa_NAR_FBgn0003002 		0.827 1.000
opa
M06063_2.00 		Drosophila melanogaster
MKVMMCCCCMCYR
YRGKGGGGKKBMK		 B1H
Zhu et al.(2011)
Opa_SANGER_5_FBgn0003002 		0.827 1.000
ref-2
M00621_2.00 		Caenorhabditis elegans
CMYRSNGNBH
DVNCNSYRKG		 PBM
Narasimhan et al.(2015)
pTH9089 		0.757 0.739
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0156945 C2H2 ZF 304 331
FBpp0156945 C2H2 ZF 337 361
FBpp0156945 C2H2 ZF 367 391
FBpp0156945 C2H2 ZF 397 421

Links

Other C2H2 ZF family TFs
Other Drosophila grimshawi TFs

64 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CCA1 Arabidopsis thaliana AT2G46830 D
EuGene.0000110367 Micromonas pusilla EuGene.0000110367 I
ONIVA05G04710 Oryza nivara ONIVA05G04710 I
ORUFI05G04560 Oryza rufipogon ORUFI05G04560 I
OS05G0162800 Oryza sativa OS05G0162800 I
Sb01g012460 Sorghum bicolor Sb01g012460 I
CCA1 Arabidopsis lyrata scaffold_403655.1 I
Si038786m.g Setaria italica Si038786m.g I
TRIUR3_06252 Triticum urartu TRIUR3_06252 I
TRIUR3_24634 Triticum urartu TRIUR3_24634 I
OGLUM05G04280 Oryza glumaepatula OGLUM05G04280 I
gw1.9.308.1 Chlorella NC64A gw1.9.308.1 I
mgf021826m Mimulus guttatus mgf021826m I
Bostr.25993s0083 Boechera stricta Bostr.25993s0083 I
Cagra.0050s0017 Capsella grandiflora Cagra.0050s0017 I
Carubv10022831m.g Capsella rubella Carubv10022831m.g I
Eucgr.K02302 Eucalyptus grandis Eucgr.K02302 I
Lus10005134.g Linum usitatissimum Lus10005134.g I
Lus10030184.g Linum usitatissimum Lus10030184.g I
F775_22448 Aegilops tauschii F775_22448 I
BGIOSGA018757 Oryza indica BGIOSGA018757 I
Bo4g006930 Brassica oleracea Bo4g006930 I
Bra004503 Brassica rapa Bra004503 I
BRADI1G34840 Brachypodium distachyon BRADI1G34840 I
BRADI2G34670 Brachypodium distachyon BRADI2G34670 I
CHLREDRAFT_112628 Chlamydomonas reinhardtii CHLREDRAFT_112628 I
CHLREDRAFT_123164 Chlamydomonas reinhardtii CHLREDRAFT_123164 I
F775_22242 Aegilops tauschii F775_22242 I
OMERI05G04320 Oryza meridionalis OMERI05G04320 I
LHY Arabidopsis lyrata fgenesh2_kg.1__131__AT1G01060.3 I
GRMZM2G115070 Zea mays GRMZM2G115070 I
LPERR05G03900 Leersia perrieri LPERR05G03900 I
MLOC_5590 Hordeum vulgare MLOC_5590 I
MLOC_59912 Hordeum vulgare MLOC_59912 I
OB05G14050 Oryza brachyantha OB05G14050 I
OBART05G04360 Oryza barthii OBART05G04360 I
OBART05G04370 Oryza barthii OBART05G04370 I