MLOC_70662 (Hordeum vulgare)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 MLOC_70662 T123617_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.756 0.696
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.756 0.696
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.756 0.696
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MLOC_70662.1 C2H2 ZF 67 89
MLOC_70662.1 C2H2 ZF 125 147

Links

Other C2H2 ZF family TFs
Other Hordeum vulgare TFs

39 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZAT10 Arabidopsis thaliana AT1G27730 D 0.756
OBART03G22570 Oryza barthii OBART03G22570 I 0.768
chr1.LjT45O14.140.nd Lotus japonicus chr1.LjT45O14.140.nd I 0.776
OGLUM03G23350 Oryza glumaepatula OGLUM03G23350 I 0.768
OLONG_027628 Oryza longistaminata OLONG_027628 I 0.768
OPUNC12G15600 Oryza punctata OPUNC12G15600 I 0.758
ORGLA03G0210300 Oryza glaberrima ORGLA03G0210300 I 0.768
ORUFI03G23240 Oryza rufipogon ORUFI03G23240 I 0.768
OS03G0437200 Oryza sativa OS03G0437200 I 0.768
OS12G0583700 Oryza sativa OS12G0583700 I 0.758
PGSC0003DMG400026020 Solanum tuberosum PGSC0003DMG400026020 I 0.766
AZF3 Arabidopsis lyrata scaffold_800768.1 I 0.758
Si023013m.g Setaria italica Si023013m.g I 0.758
Solyc01g090840.2 Solanum lycopersicum Solyc01g090840.2 I 0.766
Traes_4BS_FE945D2FC Triticum aestivum Traes_4BS_FE945D2FC I 0.758
Cucsa.219210 Cucumis sativus Cucsa.219210 I 0.766
Cucsa.352740 Cucumis sativus Cucsa.352740 I 0.776
Thhalv10001538m.g Eutrema salsugineum Thhalv10001538m.g I 0.760
chr1.CM0050.50.nc Lotus japonicus chr1.CM0050.50.nc I 0.776
AMTR_s00137p00104280 Amborella trichopoda AMTR_s00137p00104280 I 0.780
Bra040325 Brassica rapa Bra040325 I 0.760
AZF3 Arabidopsis thaliana AT5G43170 I 0.758
BGIOSGA010468 Oryza indica BGIOSGA010468 I 0.768
Bo3g037560 Brassica oleracea Bo3g037560 I 0.760
Bo3g142840 Brassica oleracea Bo3g142840 I 0.756
Bo4g195370 Brassica oleracea Bo4g195370 I 0.760
Bra000372 Brassica rapa Bra000372 I 0.760
Bra010922 Brassica rapa Bra010922 I 0.756
OB03G31780 Oryza brachyantha OB03G31780 I 0.768
BRADI1G14750 Brachypodium distachyon BRADI1G14750 I 0.758
BRADI1G16010 Brachypodium distachyon BRADI1G16010 I 0.792
STZ Arabidopsis lyrata fgenesh2_kg.1__2932__AT1G27730.1 I 0.756
GSMUA_Achr2G13410_001 Musa acuminata GSMUA_Achr2G13410_001 I 0.771
GSMUA_Achr5G08730_001 Musa acuminata GSMUA_Achr5G08730_001 I 0.758
LPERR03G19200 Leersia perrieri LPERR03G19200 I 0.768
LPERR03G21480 Leersia perrieri LPERR03G21480 I 0.758
MLOC_54674 Hordeum vulgare MLOC_54674 I 0.758
Bra029315 Brassica rapa Bra029315 N 0.762
Bo2g161550 Brassica oleracea Bo2g161550 N 0.762