Ppa-odd-1 (Pristionchus pacificus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 PPA09938 T127022_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
odd-2
M00618_2.00 		Caenorhabditis elegans
NGCTACYGK
MCRGTAGCN		 PBM
Narasimhan et al.(2015)
pTH9150 		0.766 0.826
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PPA09938 C2H2 ZF 123 145
PPA09938 C2H2 ZF 151 173
PPA09938 C2H2 ZF 179 201

Links

Other C2H2 ZF family TFs
Other Pristionchus pacificus TFs

32 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
odd-2 Caenorhabditis elegans WBGene00003846 D 0.766
nDi.2.2.2.g05871 Dirofilaria immitis nDi.2.2.2.g05871 I 0.777
DME_0000745901 Dracunculus medinensis DME_0000745901 I 0.777
EEL_0000443001 Elaeophora elaphi EEL_0000443001 I 0.774
EVEC_0001078501 Enterobius vermicularis EVEC_0001078501 I 0.769
GPUH_0001513701 Gongylonema pulchrum GPUH_0001513701 I 0.774
HCOI00889400 Haemonchus contortus HCOI00889400 I 0.775
HPLM_0001493201 Haemonchus placei HPLM_0001493201 I 0.775
nAv.1.0.1.g06169 Acanthocheilonema viteae nAv.1.0.1.g06169 I 0.774
NBR_0000990501 Nippostrongylus brasiliensis NBR_0000990501 I 0.793
DICVIV_08037 Dictyocaulus viviparus DICVIV_08037 I 0.793
NECAME_08408 Necator americanus NECAME_08408 I 0.790
nLs.2.1.2.g06827 Litomosoides sigmodontis nLs.2.1.2.g06827 I 0.771
nOo.2.0.1.g01159 Onchocerca ochengi nOo.2.0.1.g01159 I 0.774
scaffold395-EXSNAP2012.4 Pristionchus exspectatus scaffold395-EXSNAP2012.4 I 0.827
SMUV_0000818001 Syphacia muris SMUV_0000818001 I 0.769
TCNE_0000229401 Toxocara canis TCNE_0000229401 I 0.774
Bm9236 Brugia malayi Bm9236 I 0.770
BTMF_0000075201 Brugia timori BTMF_0000075201 I 0.770
ASU_07002 Ascaris suum ASU_07002 I 0.774
ANCDUO_21978 Ancylostoma duodenale ANCDUO_21978 I 0.786
ANCCEY_10108 Ancylostoma ceylanicum ANCCEY_10108 I 0.786
ANCCAN_29852 Ancylostoma caninum ANCCAN_29852 I 0.786
ACOC_0001130401 Angiostrongylus costaricensis ACOC_0001130401 I 0.786
ACAC_0000529401 Angiostrongylus cantonensis ACAC_0000529401 I 0.786
WBGene00239217 Onchocerca volvulus WBGene00239217 I 0.774
LotgiG130661 Lottia gigantea LotgiG130661 I 0.757
LOAG_00579 Loa loa LOAG_00579 I 0.774
CRE00192 Caenorhabditis remanei CRE00192 I 0.762
CJA04579 Caenorhabditis japonica CJA04579 I 0.766
CBN15373 Caenorhabditis brenneri CBN15373 I 0.766
CBG14844 Caenorhabditis briggsae CBG14844 I 0.762